ENSGALG00000033064


Gallus gallus

Features
Gene ID: ENSGALG00000033064
  
Biological name :DDX6
  
Synonyms : DDX6 / Probable ATP-dependent RNA helicase DDX6 / Q5ZKB9
  
Possible biological names infered from orthology : DEAD-box helicase 6 / Mus musculus DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 (Ddx6), transcript variant 4, mRNA. / P26196 / P54823
  
Species: Gallus gallus
  
Chr. number: 24
Strand: -1
Band:
Gene start: 5551128
Gene end: 5564568
  
Corresponding Affymetrix probe sets: Gga.2331.1.S1_at (Chicken Array)   GgaAffx.12268.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000046305
NCBI entrez gene - 419783     See in Manteia.
RefSeq - NM_001282047
RefSeq - XM_015298004
RefSeq - NM_001006319
RefSeq Peptide - NP_001268976
RefSeq Peptide - NP_001006319
swissprot - Q5ZKB9
Ensembl - ENSGALG00000033064
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ddx6ENSDARG00000061338Danio rerio
 DDX6ENSG00000110367Homo sapiens
 Ddx6ENSMUSG00000032097Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000629  ATP-dependent RNA helicase DEAD-box, conserved site
 IPR001650  Helicase, C-terminal
 IPR011545  DEAD/DEAH box helicase domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR014014  RNA helicase, DEAD-box type, Q motif
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006417 regulation of translation IBA
 biological_processGO:0010501 RNA secondary structure unwinding IBA
 biological_processGO:0019074 viral RNA genome packaging IEA
 biological_processGO:0019827 stem cell population maintenance IEA
 biological_processGO:0033962 cytoplasmic mRNA processing body assembly IEA
 biological_processGO:0045665 negative regulation of neuron differentiation IEA
 cellular_componentGO:0000932 P-body IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0010494 cytoplasmic stress granule IEA
 cellular_componentGO:0016442 RISC complex IEA
 cellular_componentGO:0036464 cytoplasmic ribonucleoprotein granule IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IBA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0019904 protein domain specific binding IEA
 molecular_functionGO:0045296 cadherin binding IEA


Pathways (from Reactome)
Pathway description
mRNA decay by 5 to 3 exoribonuclease


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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