ENSMUSG00000032097


Mus musculus

Features
Gene ID: ENSMUSG00000032097
  
Biological name :Ddx6
  
Synonyms : Ddx6 / Mus musculus DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 (Ddx6), transcript variant 4, mRNA. / P54823
  
Possible biological names infered from orthology : DEAD-box helicase 6 / P26196
  
Species: Mus musculus
  
Chr. number: 9
Strand: 1
Band: A5.2
Gene start: 44604892
Gene end: 44640731
  
Corresponding Affymetrix probe sets: 10584777 (MoGene1.0st)   1424598_at (Mouse Genome 430 2.0 Array)   1434697_at (Mouse Genome 430 2.0 Array)   1439122_at (Mouse Genome 430 2.0 Array)   1447789_x_at (Mouse Genome 430 2.0 Array)   1455946_x_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000128421
Ensembl peptide - ENSMUSP00000149620
NCBI entrez gene - 13209     See in Manteia.
MGI - MGI:104976
RefSeq - NM_007841
RefSeq - NM_181324
RefSeq - XM_017313124
RefSeq - NM_001110826
RefSeq - NM_001357702
RefSeq - NM_001357703
RefSeq - XM_011242391
RefSeq - XM_011242392
RefSeq Peptide - NP_031867
RefSeq Peptide - NP_851841
RefSeq Peptide - NP_001104296
RefSeq Peptide - NP_001344631
RefSeq Peptide - NP_001344632
swissprot - P54823
Ensembl - ENSMUSG00000032097
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ddx6ENSDARG00000061338Danio rerio
 DDX6ENSGALG00000033064Gallus gallus
 DDX6ENSG00000110367Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000629  ATP-dependent RNA helicase DEAD-box, conserved site
 IPR001650  Helicase, C-terminal
 IPR011545  DEAD/DEAH box helicase domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR014014  RNA helicase, DEAD-box type, Q motif
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006417 regulation of translation IBA
 biological_processGO:0007283 spermatogenesis IEA
 biological_processGO:0010501 RNA secondary structure unwinding IBA
 biological_processGO:0019074 viral RNA genome packaging IEA
 biological_processGO:0019827 stem cell population maintenance IMP
 biological_processGO:0033962 cytoplasmic mRNA processing body assembly IEA
 biological_processGO:0045665 negative regulation of neuron differentiation IMP
 cellular_componentGO:0000792 heterochromatin IEA
 cellular_componentGO:0000932 P-body ISO
 cellular_componentGO:0001520 outer dense fiber IEA
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0010494 cytoplasmic stress granule IEA
 cellular_componentGO:0016442 RISC complex IEA
 cellular_componentGO:0036464 cytoplasmic ribonucleoprotein granule IEA
 cellular_componentGO:0043186 P granule IEA
 cellular_componentGO:0097227 sperm annulus IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IBA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0019904 protein domain specific binding IEA
 molecular_functionGO:0045296 cadherin binding IEA


Pathways (from Reactome)
Pathway description
mRNA decay by 5 to 3 exoribonuclease


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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