ENSGALG00000037170


Gallus gallus

Features
Gene ID: ENSGALG00000037170
  
Biological name :TRIM39.2
  
Synonyms : TRIM39.2 / tripartite motif containing 39
  
Possible biological names infered from orthology :
  
Species: Gallus gallus
  
Chr. number: 16
Strand: 1
Band:
Gene start: 179587
Gene end: 183608
  
Corresponding Affymetrix probe sets: Gga.8738.1.S1_at (Chicken Array)   GgaAffx.12890.1.S1_s_at (Chicken Array)   GgaAffx.22894.1.S1_x_at (Chicken Array)   GgaAffx.22894.5.S1_at (Chicken Array)   GgaAffx.82.1.S1_at (Chicken Array)   GgaAffx.90.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000051287
Ensembl peptide - ENSGALP00000054223
NCBI entrez gene - 417041     See in Manteia.
RefSeq - NM_001006196
RefSeq Peptide - NP_001006196
swissprot - A5HUK1
swissprot - A0A1D5PMY5
Ensembl - ENSGALG00000037170
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TRIM27.2ENSGALG0000001983546
TRIM27.1ENSGALG0000003039746
TRIM7.2 / zinc finger protein RFP ENSGALG0000003827844
TRIM7 / tripartite motif containing 7 / Q923T7* / Q9C029*ENSGALG0000000010744
TRIM41 / TRIM52* / Q5NCC3* / Q8WV44* / Q96A61* / tripartite motif containing 52* / tripartite motif containing 41* / E3 ubiquitin-protein ligase TRIM41 *ENSGALG0000003056941
ENSGALG0000004161833
TRIM62 / tripartite motif containing 62 / Q80V85* / Q9BVG3* / E3 ubiquitin-protein ligase TRIM62 *ENSGALG0000002843727
Q810I2* / Q86UV6* / Q86UV7* / Q86XT4* / TRIM50* / TRIM73* / TRIM74* / tripartite motif containing 74* / tripartite motif containing 50* / tripartite motif containing 73* / Mus musculus trip...ENSGALG0000002169626
ENSGALG0000002130123
TRIM35 / tripartite motif containing 35 / Q9UPQ4*ENSGALG0000001659515


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001841  Zinc finger, RING-type
 IPR001870  B30.2/SPRY domain
 IPR003877  SPRY domain
 IPR003879  Butyrophylin-like, SPRY domain
 IPR006574  SPRY-associated
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR017907  Zinc finger, RING-type, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005622 intracellular IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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