ENSGALG00000021696


Gallus gallus

Features
Gene ID: ENSGALG00000021696
  
Biological name :
  
Synonyms :
  
Possible biological names infered from orthology : Mus musculus tripartite motif-containing 50 (Trim50), transcript variant 2, mRNA. / Q810I2 / Q86UV6 / Q86UV7 / Q86XT4 / TRIM50 / TRIM73 / TRIM74 / tripartite motif containing 50 / tripartite motif containing 73 / tripartite motif containing 74
  
Species: Gallus gallus
  
Chr. number: 19
Strand: 1
Band:
Gene start: 301097
Gene end: 305124
  
Corresponding Affymetrix probe sets: GgaAffx.22382.1.S1_x_at (Chicken Array)   GgaAffx.566.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000001268
Ensembl peptide - ENSGALP00000051341
NCBI entrez gene - 417461     See in Manteia.
RefSeq - XM_015295904
swissprot - A0A1D5PEX9
swissprot - E1C7S4
Ensembl - ENSGALG00000021696
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q86UV6ENSG00000155428Homo sapiens
 Q86UV7ENSG00000178809Homo sapiens
 Q86XT4ENSG00000146755Homo sapiens
 Q810I2ENSMUSG00000053388Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TRIM7.2 / zinc finger protein RFP ENSGALG0000003827823
TRIM7 / tripartite motif containing 7 / Q923T7* / Q9C029*ENSGALG0000000010722
TRIM39.2 / tripartite motif containing 39 ENSGALG0000003717022
TRIM41 / TRIM52* / Q5NCC3* / Q8WV44* / Q96A61* / tripartite motif containing 52* / tripartite motif containing 41* / E3 ubiquitin-protein ligase TRIM41 *ENSGALG0000003056922
TRIM27.1ENSGALG0000003039721
ENSGALG0000004161821
TRIM62 / tripartite motif containing 62 / Q80V85* / Q9BVG3* / E3 ubiquitin-protein ligase TRIM62 *ENSGALG0000002843721
TRIM27.2ENSGALG0000001983519
ENSGALG0000002130117
TRIM35 / tripartite motif containing 35 / Q9UPQ4*ENSGALG0000001659513


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001841  Zinc finger, RING-type
 IPR001870  B30.2/SPRY domain
 IPR003877  SPRY domain
 IPR003879  Butyrophylin-like, SPRY domain
 IPR006574  SPRY-associated
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR017907  Zinc finger, RING-type, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0070201 regulation of establishment of protein localization IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0016235 aggresome IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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