ENSG00000146755


Homo sapiens

Features
Gene ID: ENSG00000146755
  
Biological name :TRIM50
  
Synonyms : Q86XT4 / TRIM50 / tripartite motif containing 50
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 7
Strand: -1
Band: q11.23
Gene start: 73312539
Gene end: 73328082
  
Corresponding Affymetrix probe sets: 1556554_at (Human Genome U133 Plus 2.0 Array)   231014_at (Human Genome U133 Plus 2.0 Array)   238941_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000327994
Ensembl peptide - ENSP00000413875
NCBI entrez gene - 135892     See in Manteia.
OMIM - 612548
RefSeq - XM_011515789
RefSeq - NM_001281450
RefSeq - NM_001281451
RefSeq - NM_178125
RefSeq - XM_011515787
RefSeq - XM_011515788
RefSeq Peptide - NP_001268379
RefSeq Peptide - NP_001268380
RefSeq Peptide - NP_835226
swissprot - Q2M204
swissprot - Q86XT4
Ensembl - ENSG00000146755
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000021696Gallus gallus
 Q810I2ENSMUSG00000053388Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q86UV7 / TRIM73 / tripartite motif containing 73ENSG0000017880948
Q86UV6 / TRIM74 / tripartite motif containing 74ENSG0000015542848
Q6ZMU5 / TRIM72 / tripartite motif containing 72ENSG0000017723832
TRIM7 / Q9C029 / tripartite motif containing 7ENSG0000014605429
P14373 / TRIM27 / tripartite motif containing 27ENSG0000020471326
Q8WV44 / TRIM41 / tripartite motif containing 41ENSG0000014606326
MEFV / O15553 / MEFV, pyrin innate immunity regulatorENSG0000010331325
Q9UPQ4 / TRIM35 / tripartite motif containing 35ENSG0000010422825
Q86WT6 / TRIM69 / tripartite motif containing 69ENSG0000018588025
Q9BVG3 / TRIM62 / tripartite motif containing 62ENSG0000011652525
Q9UDY6 / TRIM10 / tripartite motif containing 10ENSG0000020461325
Q12899 / TRIM26 / tripartite motif containing 26ENSG0000023412723
Q9C019 / TRIM15 / tripartite motif containing 15ENSG0000020461020
Q9BZY9 / TRIM31 / tripartite motif containing 31ENSG0000020461615
Q96A61 / TRIM52 / tripartite motif containing 52ENSG0000018371810


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001841  Zinc finger, RING-type
 IPR001870  B30.2/SPRY domain
 IPR003877  SPRY domain
 IPR003879  Butyrophylin-like, SPRY domain
 IPR006574  SPRY-associated
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR017907  Zinc finger, RING-type, conserved site
 IPR027370  RING-type zinc-finger, LisH dimerisation motif


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IDA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0042802 identical protein binding IPI
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Antigen processing: Ubiquitination & Proteasome degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr