ENSGALG00000028437


Gallus gallus

Features
Gene ID: ENSGALG00000028437
  
Biological name :TRIM62
  
Synonyms : TRIM62 / tripartite motif containing 62
  
Possible biological names infered from orthology : E3 ubiquitin-protein ligase TRIM62 / Q80V85 / Q9BVG3
  
Species: Gallus gallus
  
Chr. number: 21
Strand: 1
Band:
Gene start: 6537124
Gene end: 6539517
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSGALP00000041446
NCBI entrez gene - 429807     See in Manteia.
RefSeq - XM_015297235
RefSeq - XM_015297236
swissprot - R4GHA7
Ensembl - ENSGALG00000028437
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 si:ch211-193i15.2ENSDARG00000095536Danio rerio
 trim62ENSDARG00000060901Danio rerio
 Q9BVG3ENSG00000116525Homo sapiens
 Q80V85ENSMUSG00000041000Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TRIM7 / tripartite motif containing 7 / Q923T7* / Q9C029*ENSGALG0000000010728
TRIM39.2 / tripartite motif containing 39 ENSGALG0000003717027
TRIM41 / TRIM52* / Q5NCC3* / Q8WV44* / Q96A61* / tripartite motif containing 52* / tripartite motif containing 41* / E3 ubiquitin-protein ligase TRIM41 *ENSGALG0000003056927
TRIM27.1ENSGALG0000003039727
ENSGALG0000002130127
TRIM7.2 / zinc finger protein RFP ENSGALG0000003827827
ENSGALG0000004161825
Q810I2* / Q86UV6* / Q86UV7* / Q86XT4* / TRIM50* / TRIM73* / TRIM74* / tripartite motif containing 74* / tripartite motif containing 50* / tripartite motif containing 73* / Mus musculus trip...ENSGALG0000002169625
TRIM27.2ENSGALG0000001983523
TRIM35 / tripartite motif containing 35 / Q9UPQ4*ENSGALG0000001659517


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001841  Zinc finger, RING-type
 IPR001870  B30.2/SPRY domain
 IPR003877  SPRY domain
 IPR003879  Butyrophylin-like, SPRY domain
 IPR006574  SPRY-associated
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR017907  Zinc finger, RING-type, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0010719 negative regulation of epithelial to mesenchymal transition IEA
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0032897 negative regulation of viral transcription IEA
 biological_processGO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling IEA
 biological_processGO:0045087 innate immune response IEA
 biological_processGO:0046596 regulation of viral entry into host cell IEA
 biological_processGO:0051091 positive regulation of DNA-binding transcription factor activity IEA
 biological_processGO:0051092 positive regulation of NF-kappaB transcription factor activity IEA
 biological_processGO:1902186 regulation of viral release from host cell IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0004842 ubiquitin-protein transferase activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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