ENSDARG00000060901


Danio rerio

Features
Gene ID: ENSDARG00000060901
  
Biological name :trim62
  
Synonyms : trim62 / tripartite motif containing 62
  
Possible biological names infered from orthology : E3 ubiquitin-protein ligase TRIM62 / Q80V85 / Q9BVG3
  
Species: Danio rerio
  
Chr. number: 11
Strand: -1
Band:
Gene start: 40331791
Gene end: 40418975
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000080731
NCBI entrez gene - 791192     See in Manteia.
RefSeq - NM_001080674
RefSeq Peptide - NP_001074143
swissprot - F1Q674
ZFIN ID - ZDB-GENE-070112-502
Ensembl - ENSDARG00000060901
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TRIM62ENSGALG00000028437Gallus gallus
 Q9BVG3ENSG00000116525Homo sapiens
 Q80V85ENSMUSG00000041000Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:ch211-193i15.2 / TRIM62 (1 of many) / Q80V85* / Q9BVG3* / TRIM62* / tripartite motif containing 62* / E3 ubiquitin-protein ligase TRIM62 *ENSDARG0000009553671
trim69 / tripartite motif containing 69 / Q86WT6*ENSDARG0000006068830
trim35-12 / tripartite motif containing 35-12 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*ENSDARG0000010126428
trim105 / tripartite motif containing 105ENSDARG0000009988527
trim47 / tripartite motif containing 47ENSDARG0000005667827
si:ch211-12p12.2 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*ENSDARG0000010221925
trim35-25 / tripartite motif containing 35-25 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*ENSDARG0000010105525
trim35-24 / tripartite motif containing 35-24 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*ENSDARG0000009968425
CR394535.1 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*ENSDARG0000010319325
trim35-28 / tripartite motif containing 35-28 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*ENSDARG0000002102125
trim35-7 / tripartite motif containing 35-7 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*ENSDARG0000005895825
trim35-10 / tripartite motif containing 35-10 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*ENSDARG0000003307125
trim35-19 / tripartite motif containing 35-19 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*ENSDARG0000009963925
trim35-13 / tripartite motif containing 35-13 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*ENSDARG0000000397025
trim35-21 / tripartite motif containing 35-21 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*ENSDARG0000010230324
trim35-3 / tripartite motif containing 35-3 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*ENSDARG0000005225524
si:dkey-37m8.11 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*ENSDARG0000004023024
trim35-20 / tripartite motif containing 35-20 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*ENSDARG0000007084724
si:ch1073-324l1.1 / TRIM35 (1 of many) / Q9UPQ4* / TRIM35* / tripartite motif containing 35*ENSDARG0000009591324
trim35-39 / tripartite motif containing 35-39 / Q9UPQ4* / TRIM35* / tripartite motif containing 35*ENSDARG0000007124124


Protein motifs (from Interpro)
Interpro ID Name
 IPR000315  B-box-type zinc finger
 IPR001841  Zinc finger, RING-type
 IPR001870  B30.2/SPRY domain
 IPR003877  SPRY domain
 IPR003879  Butyrophylin-like, SPRY domain
 IPR006574  SPRY-associated
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR017907  Zinc finger, RING-type, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005622 intracellular IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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