ENSGALG00000037879


Gallus gallus

Features
Gene ID: ENSGALG00000037879
  
Biological name :PAF1
  
Synonyms : PAF1 / PAF1 homolog, Paf1/RNA polymerase II complex component
  
Possible biological names infered from orthology : Q8K2T8 / Q8N7H5 / RNA polymerase II-associated factor 1 homolog
  
Species: Gallus gallus
  
Chr. number: 32
Strand: -1
Band:
Gene start: 42539
Gene end: 50374
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSGALP00000046348
Ensembl peptide - ENSGALP00000048668
NCBI entrez gene - 100858108     See in Manteia.
RefSeq - XM_015300217
swissprot - A0A1D5P117
Ensembl - ENSGALG00000037879
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 paf1ENSDARG00000098432Danio rerio
 PAF1ENSG00000006712Homo sapiens
 Paf1ENSMUSG00000003437Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007133  RNA polymerase II associated factor Paf1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0001711 endodermal cell fate commitment IEA
 biological_processGO:0006368 transcription elongation from RNA polymerase II promoter IEA
 biological_processGO:0006378 mRNA polyadenylation IEA
 biological_processGO:0010390 histone monoubiquitination IEA
 biological_processGO:0016570 histone modification IEA
 biological_processGO:0016584 nucleosome positioning IEA
 biological_processGO:0019827 stem cell population maintenance IEA
 biological_processGO:0031062 positive regulation of histone methylation IEA
 biological_processGO:0031442 positive regulation of mRNA 3"-end processing IEA
 biological_processGO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter IEA
 biological_processGO:0033523 histone H2B ubiquitination IEA
 biological_processGO:0034504 protein localization to nucleus IEA
 biological_processGO:0045638 negative regulation of myeloid cell differentiation IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0071222 cellular response to lipopolysaccharide IEA
 biological_processGO:1902808 positive regulation of cell cycle G1/S phase transition IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016593 Cdc73/Paf1 complex IEA
 cellular_componentGO:0030054 cell junction IEA
 molecular_functionGO:0000993 RNA polymerase II core binding IEA
 molecular_functionGO:0003682 chromatin binding IEA


Pathways (from Reactome)
Pathway description
RNA Polymerase II Pre-transcription Events
RNA Polymerase II Transcription Elongation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr