ENSGALG00000038939


Gallus gallus

Features
Gene ID: ENSGALG00000038939
  
Biological name :TARBP2
  
Synonyms : TARBP2 / TARBP2, RISC loading complex RNA binding subunit
  
Possible biological names infered from orthology : P97473 / Q15633
  
Species: Gallus gallus
  
Chr. number: 33
Strand: 1
Band:
Gene start: 861614
Gene end: 865161
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSGALP00000048385
NCBI entrez gene - 107055413     See in Manteia.
RefSeq - XM_015300348
RefSeq - XM_015300349
swissprot - A0A1D5P6Q6
Ensembl - ENSGALG00000038939
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tarbp2ENSDARG00000070471Danio rerio
 Q15633ENSG00000139546Homo sapiens
 P97473ENSMUSG00000023051Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR014720  Double-stranded RNA-binding domain
 IPR028605  RISC-loading complex subunit TRBP2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007286 spermatid development IEA
 biological_processGO:0007338 single fertilization IEA
 biological_processGO:0030422 production of siRNA involved in RNA interference IEA
 biological_processGO:0030423 targeting of mRNA for destruction involved in RNA interference IEA
 biological_processGO:0031054 pre-miRNA processing IEA
 biological_processGO:0035087 siRNA loading onto RISC involved in RNA interference IEA
 biological_processGO:0035196 production of miRNAs involved in gene silencing by miRNA IEA
 biological_processGO:0035264 multicellular organism growth IEA
 biological_processGO:0035280 miRNA loading onto RISC involved in gene silencing by miRNA IEA
 biological_processGO:0045070 positive regulation of viral genome replication IEA
 biological_processGO:0045727 positive regulation of translation IEA
 biological_processGO:0046782 regulation of viral transcription IEA
 biological_processGO:0050689 negative regulation of defense response to virus by host IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0016442 RISC complex IEA
 cellular_componentGO:0016604 nuclear body IEA
 cellular_componentGO:0035068 micro-ribonucleoprotein complex IEA
 cellular_componentGO:0070578 RISC-loading complex IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003725 double-stranded RNA binding IEA
 molecular_functionGO:0019899 enzyme binding IEA
 molecular_functionGO:0035197 siRNA binding IEA
 molecular_functionGO:0042802 identical protein binding IEA
 molecular_functionGO:0042803 protein homodimerization activity IEA
 molecular_functionGO:0047485 protein N-terminus binding IEA
 molecular_functionGO:0070883 pre-miRNA binding IEA


Pathways (from Reactome)
Pathway description
MicroRNA (miRNA) biogenesis
Small interfering RNA (siRNA) biogenesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr