ENSDARG00000070471


Danio rerio

Features
Gene ID: ENSDARG00000070471
  
Biological name :tarbp2
  
Synonyms : tarbp2 / TAR (HIV) RNA binding protein 2
  
Possible biological names infered from orthology : P97473 / Q15633 / TARBP2, RISC loading complex RNA binding subunit
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 46725540
Gene end: 46735380
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000094231
NCBI entrez gene - 336141     See in Manteia.
RefSeq - NM_199997
RefSeq Peptide - NP_956291
swissprot - F1QP01
ZFIN ID - ZDB-GENE-030131-8085
Ensembl - ENSDARG00000070471
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TARBP2ENSGALG00000038939Gallus gallus
 Q15633ENSG00000139546Homo sapiens
 P97473ENSMUSG00000023051Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
prkra / B0V3F8 / protein kinase, interferon-inducible double stranded RNA dependent activator / O75569* / Q9WTX2* / protein activator of interferon induced protein kinase EIF2AK2* / Interfe...ENSDARG0000007671837


Protein motifs (from Interpro)
Interpro ID Name
 IPR014720  Double-stranded RNA-binding domain
 IPR028605  RISC-loading complex subunit TRBP2
 IPR032478  Staufen, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006417 regulation of translation IEA
 biological_processGO:0030422 production of siRNA involved in RNA interference IEA
 biological_processGO:0030423 targeting of mRNA for destruction involved in RNA interference IEA
 biological_processGO:0031047 gene silencing by RNA IEA
 biological_processGO:0031054 pre-miRNA processing IEA
 biological_processGO:0035280 miRNA loading onto RISC involved in gene silencing by miRNA IEA
 biological_processGO:0046782 regulation of viral transcription IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0016442 RISC complex IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003725 double-stranded RNA binding IEA
 molecular_functionGO:0035197 siRNA binding IEA
 molecular_functionGO:0035198 miRNA binding IEA
 molecular_functionGO:0042803 protein homodimerization activity IEA


Pathways (from Reactome)
Pathway description
MicroRNA (miRNA) biogenesis
Small interfering RNA (siRNA) biogenesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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