ENSGALG00000039288


Gallus gallus

Features
Gene ID: ENSGALG00000039288
  
Biological name :RBM5
  
Synonyms : RBM5 / RNA-binding protein 5
  
Possible biological names infered from orthology : P52756 / Q91YE7 / RNA binding motif protein 5
  
Species: Gallus gallus
  
Chr. number: 12
Strand: 1
Band:
Gene start: 3142546
Gene end: 3157760
  
Corresponding Affymetrix probe sets: Gga.12181.1.S1_at (Chicken Array)   Gga.13438.1.S1_s_at (Chicken Array)   Gga.5892.1.S1_at (Chicken Array)   GgaAffx.26256.1.S1_at (Chicken Array)   GgaAffx.26266.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000055027
Ensembl peptide - ENSGALP00000059646
Ensembl peptide - ENSGALP00000059605
Ensembl peptide - ENSGALP00000058677
Ensembl peptide - ENSGALP00000055614
NCBI entrez gene - 415947     See in Manteia.
RefSeq - NM_001012780
RefSeq - XM_015292839
RefSeq Peptide - NP_001012798
swissprot - A0A1D5PRT6
swissprot - A0A1L1RLJ7
swissprot - A0A1D5PQ66
swissprot - A0A1L1RLF7
swissprot - A0A1L1RIV4
Ensembl - ENSGALG00000039288
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rbm5ENSDARG00000098280Danio rerio
 RBM5ENSG00000003756Homo sapiens
 Rbm5ENSMUSG00000032580Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RBM6 / RNA-binding protein 6 / P78332* / RNA binding motif protein 6*ENSGALG0000003557826


Protein motifs (from Interpro)
Interpro ID Name
 IPR000467  G-patch domain
 IPR000504  RNA recognition motif domain
 IPR001876  Zinc finger, RanBP2-type
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily
 IPR033094  RNA-binding protein 5


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000245 spliceosomal complex assembly IEA
 biological_processGO:0000381 regulation of alternative mRNA splicing, via spliceosome IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0042981 regulation of apoptotic process IEA
 biological_processGO:0043065 positive regulation of apoptotic process IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003729 mRNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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