ENSDARG00000098280


Danio rerio

Features
Gene ID: ENSDARG00000098280
  
Biological name :rbm5
  
Synonyms : rbm5 / RNA binding motif protein 5
  
Possible biological names infered from orthology : P52756 / Q91YE7 / RNA-binding protein 5
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 53263854
Gene end: 53282595
  
Corresponding Affymetrix probe sets: Dr.24454.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000136127
Ensembl peptide - ENSDARP00000137187
Ensembl peptide - ENSDARP00000139300
Ensembl peptide - ENSDARP00000135414
swissprot - X1WER7
swissprot - A0A0G2KUM0
swissprot - A0A0G2KXK5
swissprot - A0A0G2L3H6
swissprot - A6H8S5
ZFIN ID - ZDB-GENE-030131-3022
Ensembl - ENSDARG00000098280
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RBM5ENSGALG00000039288Gallus gallus
 RBM5ENSG00000003756Homo sapiens
 Rbm5ENSMUSG00000032580Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rbm10 / RNA binding motif protein 10 / P98175* / Q99KG3* / Mus musculus RNA binding motif protein 10 (Rbm10), transcript variant 4, mRNA.*ENSDARG0000007740034
rbm6 / RNA binding motif protein 6 / P78332*ENSDARG0000007706026


Protein motifs (from Interpro)
Interpro ID Name
 IPR000467  G-patch domain
 IPR000504  RNA recognition motif domain
 IPR001876  Zinc finger, RanBP2-type
 IPR013087  Zinc finger C2H2-type
 IPR033094  RNA-binding protein 5
 IPR034991  RNA-binding protein 5, RNA recognition motif 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000381 regulation of alternative mRNA splicing, via spliceosome IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0042981 regulation of apoptotic process IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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