ENSGALG00000042071


Gallus gallus

Features
Gene ID: ENSGALG00000042071
  
Biological name :VPS53
  
Synonyms : Q5ZLD7 / Vacuolar protein sorting-associated protein 53 homolog / VPS53
  
Possible biological names infered from orthology : Q5VIR6 / Q8CCB4 / VPS53, GARP complex subunit
  
Species: Gallus gallus
  
Chr. number: 19
Strand: 1
Band:
Gene start: 6938833
Gene end: 6998222
  
Corresponding Affymetrix probe sets: Gga.10180.1.S1_a_at (Chicken Array)   Gga.10180.2.A1_at (Chicken Array)   Gga.15855.1.S1_at (Chicken Array)   Gga.18579.1.S1_at (Chicken Array)   Gga.18876.1.S1_at (Chicken Array)   GgaAffx.11900.1.S1_s_at (Chicken Array)   GgaAffx.3030.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000044496
Ensembl peptide - ENSGALP00000048987
Ensembl peptide - ENSGALP00000045679
NCBI entrez gene - 417622     See in Manteia.
RefSeq - NM_001012806
RefSeq Peptide - NP_001012824
swissprot - A0A1D5P8E0
swissprot - A0A1D5NVW7
swissprot - Q5ZLD7
Ensembl - ENSGALG00000042071
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 vps53ENSDARG00000069324Danio rerio
 VPS53ENSG00000141252Homo sapiens
 Vps53ENSMUSG00000017288Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007234  Vps53-like, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007041 lysosomal transport IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0032456 endocytic recycling IEA
 biological_processGO:0042147 retrograde transport, endosome to Golgi IEA
 cellular_componentGO:0000938 GARP complex IEA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005802 trans-Golgi network IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0010008 endosome membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IEA
 cellular_componentGO:0055037 recycling endosome ISS
 cellular_componentGO:1990745 EARP complex IEA


Pathways (from Reactome)
Pathway description
Retrograde transport at the Trans-Golgi-Network


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000008847 VPS54 / VPS54, GARP complex subunit / Q5SPW0* / Q9P1Q0*  / complex
 ENSGALG00000004166 VPS51 / Q5ZJ25 / Vacuolar protein sorting-associated protein 51 homolog / Tm7sf2* / Q3UVL4* / Q71KT5* / Q9UID3* / VPS51, GARP complex subunit* / transmembrane 7 superfamily member 2*  / complex






 

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