ENSGALG00000004166


Gallus gallus

Features
Gene ID: ENSGALG00000004166
  
Biological name :VPS51
  
Synonyms : Q5ZJ25 / Vacuolar protein sorting-associated protein 51 homolog / VPS51
  
Possible biological names infered from orthology : Q3UVL4 / Q71KT5 / Q9UID3 / Tm7sf2 / transmembrane 7 superfamily member 2 / VPS51, GARP complex subunit
  
Species: Gallus gallus
  
Chr. number: 5
Strand: -1
Band:
Gene start: 1605572
Gene end: 1615033
  
Corresponding Affymetrix probe sets: Gga.17583.1.S1_s_at (Chicken Array)   GgaAffx.12712.1.S1_at (Chicken Array)   GgaAffx.2574.1.S1_s_at (Chicken Array)   GgaAffx.2580.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000039522
NCBI entrez gene - 422984     See in Manteia.
RefSeq - NM_001031172
RefSeq - XM_015286198
RefSeq Peptide - NP_001026343
swissprot - Q5ZJ25
Ensembl - ENSGALG00000004166
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 vps51ENSDARG00000062016Danio rerio
 VPS51ENSG00000149823Homo sapiens
 Q3UVL4ENSMUSG00000024799Mus musculus
 Vps51ENSMUSG00000024797Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR014812  Vacuolar protein sorting-associated protein 51


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006869 lipid transport IEA
 biological_processGO:0006914 autophagy IEA
 biological_processGO:0007030 Golgi organization IBA
 biological_processGO:0007041 lysosomal transport IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0032456 endocytic recycling IEA
 biological_processGO:0042147 retrograde transport, endosome to Golgi IEA
 biological_processGO:0048193 Golgi vesicle transport IBA
 cellular_componentGO:0000938 GARP complex IEA
 cellular_componentGO:0005730 nucleolus IEA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005794 Golgi apparatus ISS
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IBA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 cellular_componentGO:0055037 recycling endosome ISS
 cellular_componentGO:1990745 EARP complex IEA


Pathways (from Reactome)
Pathway description
Retrograde transport at the Trans-Golgi-Network


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000042071 VPS53 / Q5ZLD7 / Vacuolar protein sorting-associated protein 53 homolog / Q8CCB4* / Q5VIR6* / VPS53, GARP complex subunit*  / complex
 ENSGALG00000008847 VPS54 / VPS54, GARP complex subunit / Q5SPW0* / Q9P1Q0*  / complex






 

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