ENSDARG00000069324


Danio rerio

Features
Gene ID: ENSDARG00000069324
  
Biological name :vps53
  
Synonyms : vacuolar protein sorting 53 homolog (S. cerevisiae) / vps53
  
Possible biological names infered from orthology : Q5VIR6 / Q8CCB4 / VPS53, GARP complex subunit
  
Species: Danio rerio
  
Chr. number: 15
Strand: -1
Band:
Gene start: 25100726
Gene end: 25153403
  
Corresponding Affymetrix probe sets: Dr.6227.1.A1_at (Zebrafish Array)   NM_001007458_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000157632
Ensembl peptide - ENSDARP00000072558
Ensembl peptide - ENSDARP00000110309
NCBI entrez gene - 492817     See in Manteia.
RefSeq - NM_001007458
RefSeq - XM_005157580
RefSeq Peptide - NP_001007459
swissprot - Q5U3C9
swissprot - E7FAG0
ZFIN ID - ZDB-GENE-041114-199
Ensembl - ENSDARG00000069324
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 VPS53ENSGALG00000042071Gallus gallus
 VPS53ENSG00000141252Homo sapiens
 Vps53ENSMUSG00000017288Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007234  Vps53-like, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0042147 retrograde transport, endosome to Golgi IBA
 cellular_componentGO:0000938 GARP complex IBA
 cellular_componentGO:0005829 cytosol IEA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
Retrograde transport at the Trans-Golgi-Network


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000018432 m6pr / mannose-6-phosphate receptor (cation dependent) / P20645* / P24668* / Cation-dependent mannose-6-phosphate receptor *  / reaction
 ENSDARG00000045027 rab9a / RAB9A, member RAS oncogene family / Rab9* / Q9R0M6* / P51151* / RAB9, member RAS oncogene family*  / reaction
 ENSDARG00000006094 igf2r / insulin-like growth factor 2 receptor / P11717* / Q07113* / Cation-independent mannose-6-phosphate receptor *  / reaction
 ENSDARG00000045065 vti1a / vesicle transport through interaction with t-SNAREs 1A / O89116* / Q96AJ9*  / reaction
 ENSDARG00000075030 stx10 / syntaxin 10 / O60499*  / reaction
 ENSDARG00000070161 vamp3 / vesicle-associated membrane protein 3 (cellubrevin) / P63024* / Q15836* / vesicle associated membrane protein 3*  / reaction
 ENSDARG00000003307 stx16 / syntaxin 16 / Q8BVI5* / O14662* / STX16-NPEPL1* / STX16-NPEPL1 readthrough (NMD candidate)*  / reaction
 ENSDARG00000099258 vps52 / vacuolar protein sorting 52 homolog (S. cerevisiae) / Q8C754* / Q8N1B4* / VPS52, GARP complex subunit*  / complex
 ENSDARG00000112165 Q6GQN7 / rabepk / Rab9 effector protein with kelch motifs / Q7Z6M1*  / reaction






 

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