ENSDARG00000112165


Danio rerio

Features
Gene ID: ENSDARG00000112165
  
Biological name :rabepk
  
Synonyms : Q6GQN7 / Rab9 effector protein with kelch motifs / rabepk
  
Possible biological names infered from orthology : Q7Z6M1 / Q8VCH5
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 2693601
Gene end: 2709671
  
Corresponding Affymetrix probe sets: Dr.17666.1.A1_at (Zebrafish Array)   NM_001002209_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000148548
NCBI entrez gene - 431756     See in Manteia.
RefSeq - NM_001002209
RefSeq Peptide - NP_001002209
swissprot - B2GNL1
swissprot - Q6GQN7
ZFIN ID - ZDB-GENE-040704-52
Ensembl - ENSDARG00000112165
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RABEPKENSGALG00000042210Gallus gallus
 Q7Z6M1ENSG00000136933Homo sapiens
 Q8VCH5ENSMUSG00000070953Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
hcfc1b / host cell factor C1b / HCFC1* / Q61191* / P51610* / host cell factor C1* / Host cell factor 1 HCF N-terminal chain 1 HCF N-terminal chain 2 HCF N-terminal chain 3 HCF N-terminal ch...ENSDARG0000001251924
krcp / kelch repeat-containing proteinENSDARG0000004022424
hcfc1a / host cell factor C1a / HCFC1* / Q61191* / P51610* / host cell factor C1* / Host cell factor 1 HCF N-terminal chain 1 HCF N-terminal chain 2 HCF N-terminal chain 3 HCF N-terminal ch...ENSDARG0000001599023
hcfc2 / host cell factor C2 / Q9Y5Z7*ENSDARG0000005812723
zmp:0000001301ENSDARG0000009088622
zgc:163014ENSDARG0000007410020
lztr1 / leucine-zipper-like transcription regulator 1 / Q8N653* / Q9CQ33* / Mus musculus leucine-zipper-like transcriptional regulator, 1 (Lztr1), transcript variant 2, mRNA.*ENSDARG0000001590518
klhdc10 / kelch domain containing 10 / Q6PAR0* / Q6PID8* / Kelch domain-containing protein 10 *ENSDARG0000000776415
klhdc3 / kelch domain containing 3 / Q9BQ90*ENSDARG0000010277211
klhdc2 / kelch domain containing 2 / Q9Y2U9*ENSDARG0000010486411


Protein motifs (from Interpro)
Interpro ID Name
 IPR011043  Galactose oxidase/kelch, beta-propeller
 IPR011498  Kelch repeat type 2
 IPR015915  Kelch-type beta propeller


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND


Pathways (from Reactome)
Pathway description
Retrograde transport at the Trans-Golgi-Network


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000045065 vti1a / vesicle transport through interaction with t-SNAREs 1A / O89116* / Q96AJ9*  / reaction
 ENSDARG00000075030 stx10 / syntaxin 10 / O60499*  / reaction
 ENSDARG00000070161 vamp3 / vesicle-associated membrane protein 3 (cellubrevin) / P63024* / Q15836* / vesicle associated membrane protein 3*  / complex
 ENSDARG00000003307 stx16 / syntaxin 16 / Q8BVI5* / O14662* / STX16-NPEPL1* / STX16-NPEPL1 readthrough (NMD candidate)*  / reaction
 ENSDARG00000045027 rab9a / RAB9A, member RAS oncogene family / Rab9* / Q9R0M6* / P51151* / RAB9, member RAS oncogene family*  / complex
 ENSDARG00000069324 vps53 / vacuolar protein sorting 53 homolog (S. cerevisiae) / Q5VIR6* / Q8CCB4* / VPS53, GARP complex subunit*  / reaction
 ENSDARG00000006094 igf2r / insulin-like growth factor 2 receptor / P11717* / Q07113* / Cation-independent mannose-6-phosphate receptor *  / complex
 ENSDARG00000018432 m6pr / mannose-6-phosphate receptor (cation dependent) / P20645* / P24668* / Cation-dependent mannose-6-phosphate receptor *  / complex
 ENSDARG00000099258 vps52 / vacuolar protein sorting 52 homolog (S. cerevisiae) / Q8C754* / Q8N1B4* / VPS52, GARP complex subunit*  / reaction






 

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