ENSDARG00000070161


Danio rerio

Features
Gene ID: ENSDARG00000070161
  
Biological name :vamp3
  
Synonyms : vamp3 / vesicle-associated membrane protein 3 (cellubrevin)
  
Possible biological names infered from orthology : P63024 / Q15836 / vesicle associated membrane protein 3
  
Species: Danio rerio
  
Chr. number: 11
Strand: 1
Band:
Gene start: 39928828
Gene end: 39956925
  
Corresponding Affymetrix probe sets: Dr.5589.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000133743
Ensembl peptide - ENSDARP00000145619
Ensembl peptide - ENSDARP00000114025
NCBI entrez gene - 415163     See in Manteia.
RefSeq - XM_005155905
RefSeq Peptide - NP_001002073
swissprot - A0A0R4IJN3
swissprot - Q6IQK3
ZFIN ID - ZDB-GENE-040625-45
Ensembl - ENSDARG00000070161
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 VAMP3ENSGALG00000000579Gallus gallus
 VAMP3ENSG00000049245Homo sapiens
 Vamp3ENSMUSG00000028955Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
vamp2 / vesicle-associated membrane protein 2ENSDARG0000005687775
zgc:92912 / VAMP1* / P23763* / Q62442* / vesicle associated membrane protein 1*ENSDARG0000009757670
vamp1 / vesicle-associated membrane protein 1 / P23763* / Q62442*ENSDARG0000003128369
vamp8 / vesicle-associated membrane protein 8 (endobrevin) / Q9BV40* / vesicle associated membrane protein 8*ENSDARG0000002411638
si:ch73-234b20.5ENSDARG0000008699636
vamp4 / vesicle-associated membrane protein 4 / O70480* / O75379*ENSDARG0000004351031


Protein motifs (from Interpro)
Interpro ID Name
 IPR001388  Synaptobrevin
 IPR016444  Synaptobrevin/Vesicle-associated membrane protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006887 exocytosis IBA
 biological_processGO:0006906 vesicle fusion IBA
 biological_processGO:0016192 vesicle-mediated transport IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0031201 SNARE complex IBA
 molecular_functionGO:0000149 SNARE binding IBA
 molecular_functionGO:0005484 SNAP receptor activity IBA


Pathways (from Reactome)
Pathway description
Retrograde transport at the Trans-Golgi-Network
Cargo recognition for clathrin-mediated endocytosis
Clathrin-mediated endocytosis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000020405 napab / N-ethylmaleimide-sensitive factor attachment protein, alpha b / NAPA* / Q9DB05* / P54920* / NSF attachment protein alpha* / Alpha-soluble NSF attachment protein *  / complex / reaction
 ENSDARG00000038991 nsfb / N-ethylmaleimide-sensitive factor b / NSF* / P46459* / P46460* / Vesicle-fusing ATPase * / N-ethylmaleimide sensitive factor, vesicle fusing ATPase*  / complex / reaction
 ENSDARG00000045065 vti1a / vesicle transport through interaction with t-SNAREs 1A / O89116* / Q96AJ9*  / reaction / complex
 ENSDARG00000007654 nsfa / N-ethylmaleimide-sensitive factor a / NSF* / P46459* / P46460* / Vesicle-fusing ATPase * / N-ethylmaleimide sensitive factor, vesicle fusing ATPase*  / complex / reaction
 ENSDARG00000075030 stx10 / syntaxin 10 / O60499*  / reaction / complex
 ENSDARG00000006094 igf2r / insulin-like growth factor 2 receptor / P11717* / Q07113* / Cation-independent mannose-6-phosphate receptor *  / complex
 ENSDARG00000045027 rab9a / RAB9A, member RAS oncogene family / Rab9* / Q9R0M6* / P51151* / RAB9, member RAS oncogene family*  / complex
 ENSDARG00000003307 stx16 / syntaxin 16 / Q8BVI5* / O14662* / STX16-NPEPL1* / STX16-NPEPL1 readthrough (NMD candidate)*  / complex / reaction
 ENSDARG00000069324 vps53 / vacuolar protein sorting 53 homolog (S. cerevisiae) / Q5VIR6* / Q8CCB4* / VPS53, GARP complex subunit*  / reaction
 ENSDARG00000018432 m6pr / mannose-6-phosphate receptor (cation dependent) / P20645* / P24668* / Cation-dependent mannose-6-phosphate receptor *  / complex
 ENSDARG00000099258 vps52 / vacuolar protein sorting 52 homolog (S. cerevisiae) / Q8C754* / Q8N1B4* / VPS52, GARP complex subunit*  / reaction
 ENSDARG00000112165 Q6GQN7 / rabepk / Rab9 effector protein with kelch motifs / Q7Z6M1*  / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr