ENSDARG00000003307


Danio rerio

Features
Gene ID: ENSDARG00000003307
  
Biological name :stx16
  
Synonyms : stx16 / syntaxin 16
  
Possible biological names infered from orthology : O14662 / Q8BVI5 / STX16-NPEPL1 / STX16-NPEPL1 readthrough (NMD candidate)
  
Species: Danio rerio
  
Chr. number: 6
Strand: 1
Band:
Gene start: 49722970
Gene end: 49740750
  
Corresponding Affymetrix probe sets: Dr.12906.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000146981
Ensembl peptide - ENSDARP00000128214
Ensembl peptide - ENSDARP00000128591
NCBI entrez gene - 562857     See in Manteia.
RefSeq - XM_005172118
RefSeq - XM_021477289
RefSeq - XM_021477290
RefSeq - XM_021477291
RefSeq - XM_686224
RefSeq - XM_005172117
RefSeq - XM_005172119
RefSeq - XM_021477288
swissprot - X1WDB5
swissprot - X1WEE0
swissprot - E7F9L7
ZFIN ID - ZDB-GENE-060810-113
Ensembl - ENSDARG00000003307
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 STX16ENSGALG00000007541Gallus gallus
 STX16ENSG00000124222Homo sapiens
 STX16-NPEPL1ENSG00000254995Homo sapiens
 Stx16ENSMUSG00000027522Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000727  Target SNARE coiled-coil homology domain
 IPR006011  Syntaxin, N-terminal domain
 IPR006012  Syntaxin/epimorphin, conserved site
 IPR010989  SNARE
 IPR028673  Syntaxin-16


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IBA
 biological_processGO:0006906 vesicle fusion IBA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0039023 pronephric duct morphogenesis IMP
 biological_processGO:0048278 vesicle docking IBA
 biological_processGO:0061025 membrane fusion IEA
 cellular_componentGO:0012505 endomembrane system IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IBA
 cellular_componentGO:0031201 SNARE complex IEA
 molecular_functionGO:0000149 SNARE binding IBA
 molecular_functionGO:0005484 SNAP receptor activity IBA


Pathways (from Reactome)
Pathway description
Intra-Golgi traffic
Retrograde transport at the Trans-Golgi-Network


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000020405 napab / N-ethylmaleimide-sensitive factor attachment protein, alpha b / NAPA* / Q9DB05* / P54920* / NSF attachment protein alpha* / Alpha-soluble NSF attachment protein *  / complex / reaction
 ENSDARG00000042742 stx6 / syntaxin 6 / O43752*  / complex
 ENSDARG00000038991 nsfb / N-ethylmaleimide-sensitive factor b / NSF* / P46459* / P46460* / Vesicle-fusing ATPase * / N-ethylmaleimide sensitive factor, vesicle fusing ATPase*  / reaction / complex
 ENSDARG00000045065 vti1a / vesicle transport through interaction with t-SNAREs 1A / O89116* / Q96AJ9*  / complex
 ENSDARG00000007654 nsfa / N-ethylmaleimide-sensitive factor a / NSF* / P46459* / P46460* / Vesicle-fusing ATPase * / N-ethylmaleimide sensitive factor, vesicle fusing ATPase*  / reaction / complex
 ENSDARG00000075030 stx10 / syntaxin 10 / O60499*  / complex
 ENSDARG00000070161 vamp3 / vesicle-associated membrane protein 3 (cellubrevin) / P63024* / Q15836* / vesicle associated membrane protein 3*  / complex / reaction
 ENSDARG00000112165 Q6GQN7 / rabepk / Rab9 effector protein with kelch motifs / Q7Z6M1*  / reaction
 ENSDARG00000006094 igf2r / insulin-like growth factor 2 receptor / P11717* / Q07113* / Cation-independent mannose-6-phosphate receptor *  / reaction
 ENSDARG00000099258 vps52 / vacuolar protein sorting 52 homolog (S. cerevisiae) / Q8C754* / Q8N1B4* / VPS52, GARP complex subunit*  / reaction
 ENSDARG00000018432 m6pr / mannose-6-phosphate receptor (cation dependent) / P20645* / P24668* / Cation-dependent mannose-6-phosphate receptor *  / reaction
 ENSDARG00000045027 rab9a / RAB9A, member RAS oncogene family / Rab9* / Q9R0M6* / P51151* / RAB9, member RAS oncogene family*  / reaction
 ENSDARG00000069324 vps53 / vacuolar protein sorting 53 homolog (S. cerevisiae) / Q5VIR6* / Q8CCB4* / VPS53, GARP complex subunit*  / reaction
 ENSDARG00000043510 vamp4 / vesicle-associated membrane protein 4 / O70480* / O75379*  / complex






 

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