ENSDARG00000042742


Danio rerio

Features
Gene ID: ENSDARG00000042742
  
Biological name :stx6
  
Synonyms : stx6 / syntaxin 6
  
Possible biological names infered from orthology : O43752 / Q9JKK1
  
Species: Danio rerio
  
Chr. number: 22
Strand: -1
Band:
Gene start: 16482631
Gene end: 16494406
  
Corresponding Affymetrix probe sets: Dr.4027.1.A1_at (Zebrafish Array)   Dr.4836.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000062726
NCBI entrez gene - 550577     See in Manteia.
swissprot - Q567Y3
ZFIN ID - ZDB-GENE-030131-858
Ensembl - ENSDARG00000042742
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 STX6ENSGALG00000003880Gallus gallus
 STX6ENSG00000135823Homo sapiens
 Stx6ENSMUSG00000026470Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
stx10 / syntaxin 10 / O60499*ENSDARG0000011408159
stx10 / syntaxin 10 / O60499*ENSDARG0000007503059


Protein motifs (from Interpro)
Interpro ID Name
 IPR000727  Target SNARE coiled-coil homology domain
 IPR006012  Syntaxin/epimorphin, conserved site
 IPR010989  SNARE
 IPR015260  Syntaxin 6, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IBA
 biological_processGO:0006906 vesicle fusion IBA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0048193 Golgi vesicle transport IEA
 biological_processGO:0048278 vesicle docking IBA
 cellular_componentGO:0012505 endomembrane system IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IBA
 cellular_componentGO:0031201 SNARE complex IBA
 molecular_functionGO:0000149 SNARE binding IBA
 molecular_functionGO:0005484 SNAP receptor activity IBA


Pathways (from Reactome)
Pathway description
Intra-Golgi traffic
Retrograde transport at the Trans-Golgi-Network


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000020405 napab / N-ethylmaleimide-sensitive factor attachment protein, alpha b / NAPA* / Q9DB05* / P54920* / NSF attachment protein alpha* / Alpha-soluble NSF attachment protein *  / reaction / complex
 ENSDARG00000003307 stx16 / syntaxin 16 / Q8BVI5* / O14662* / STX16-NPEPL1* / STX16-NPEPL1 readthrough (NMD candidate)*  / complex
 ENSDARG00000045065 vti1a / vesicle transport through interaction with t-SNAREs 1A / O89116* / Q96AJ9*  / complex
 ENSDARG00000043510 vamp4 / vesicle-associated membrane protein 4 / O70480* / O75379*  / complex
 ENSDARG00000038991 nsfb / N-ethylmaleimide-sensitive factor b / NSF* / P46459* / P46460* / Vesicle-fusing ATPase * / N-ethylmaleimide sensitive factor, vesicle fusing ATPase*  / complex / reaction
 ENSDARG00000007654 nsfa / N-ethylmaleimide-sensitive factor a / NSF* / P46459* / P46460* / Vesicle-fusing ATPase * / N-ethylmaleimide sensitive factor, vesicle fusing ATPase*  / reaction / complex






 

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