ENSDARG00000043510


Danio rerio

Features
Gene ID: ENSDARG00000043510
  
Biological name :vamp4
  
Synonyms : vamp4 / vesicle-associated membrane protein 4
  
Possible biological names infered from orthology : O70480 / O75379
  
Species: Danio rerio
  
Chr. number: 20
Strand: 1
Band:
Gene start: 14968031
Gene end: 15006337
  
Corresponding Affymetrix probe sets: Dr.11192.1.A1_at (Zebrafish Array)   NM_200735_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000063873
Ensembl peptide - ENSDARP00000148329
Ensembl peptide - ENSDARP00000156743
Ensembl peptide - ENSDARP00000125729
Ensembl peptide - ENSDARP00000125798
NCBI entrez gene - 393708     See in Manteia.
RefSeq - NM_200735
RefSeq Peptide - NP_957029
swissprot - F6P4N7
swissprot - I3IS63
swissprot - I3ISC5
swissprot - Q6IQB0
ZFIN ID - ZDB-GENE-040625-92
Ensembl - ENSDARG00000043510
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 VAMP4ENSGALG00000031381Gallus gallus
 VAMP4ENSG00000117533Homo sapiens
 Vamp4ENSMUSG00000026696Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
vamp2 / vesicle-associated membrane protein 2ENSDARG0000005687715
vamp1 / vesicle-associated membrane protein 1 / P23763* / Q62442*ENSDARG0000003128315
zgc:92912 / VAMP1* / P23763* / Q62442* / vesicle associated membrane protein 1*ENSDARG0000009757614
vamp3 / vesicle-associated membrane protein 3 (cellubrevin) / P63024* / Q15836* / vesicle associated membrane protein 3*ENSDARG0000007016114
vamp8 / vesicle-associated membrane protein 8 (endobrevin) / Q9BV40* / vesicle associated membrane protein 8*ENSDARG0000002411613
si:ch73-234b20.5ENSDARG0000008699613


Protein motifs (from Interpro)
Interpro ID Name
 IPR001388  Synaptobrevin
 IPR016444  Synaptobrevin/Vesicle-associated membrane protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016192 vesicle-mediated transport IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
Retrograde transport at the Trans-Golgi-Network
Cargo recognition for clathrin-mediated endocytosis
Clathrin-mediated endocytosis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000002790 Q6NWK2 / ap2m1a / ap2m1b / adaptor-related protein complex 2, mu 1 subunit, b / AP2M1* / Q96CW1* / P84091* / AP-2 complex subunit mu * / adaptor related protein complex 2 mu 1 subunit*  / reaction / complex
 ENSDARG00000020405 napab / N-ethylmaleimide-sensitive factor attachment protein, alpha b / NAPA* / Q9DB05* / P54920* / NSF attachment protein alpha* / Alpha-soluble NSF attachment protein *  / complex / reaction
 ENSDARG00000035152 ap2b1 / adaptor-related protein complex 2, beta 1 subunit / P63010* / Q9DBG3* / AP-2 complex subunit beta *  / complex / reaction
 ENSDARG00000026967 ap2s1 / adaptor-related protein complex 2, sigma 1 subunit / P53680* / P62743* / AP-2 complex subunit sigma *  / reaction / complex
 ENSDARG00000045065 vti1a / vesicle transport through interaction with t-SNAREs 1A / O89116* / Q96AJ9*  / complex
 ENSDARG00000033899 ap2m1b / adaptor-related protein complex 2, mu 1 subunit, b / AP2M1* / Q96CW1* / P84091* / AP-2 complex subunit mu * / adaptor related protein complex 2 mu 1 subunit*  / complex / reaction
 ENSDARG00000042742 stx6 / syntaxin 6 / O43752*  / complex
 ENSDARG00000038991 nsfb / N-ethylmaleimide-sensitive factor b / NSF* / P46459* / P46460* / Vesicle-fusing ATPase * / N-ethylmaleimide sensitive factor, vesicle fusing ATPase*  / complex / reaction
 ENSDARG00000007654 nsfa / N-ethylmaleimide-sensitive factor a / NSF* / P46459* / P46460* / Vesicle-fusing ATPase * / N-ethylmaleimide sensitive factor, vesicle fusing ATPase*  / complex / reaction
 ENSDARG00000003307 stx16 / syntaxin 16 / Q8BVI5* / O14662* / STX16-NPEPL1* / STX16-NPEPL1 readthrough (NMD candidate)*  / complex






 

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