ENSGALG00000031381


Gallus gallus

Features
Gene ID: ENSGALG00000031381
  
Biological name :VAMP4
  
Synonyms : VAMP4 / vesicle associated membrane protein 4
  
Possible biological names infered from orthology : O70480 / O75379
  
Species: Gallus gallus
  
Chr. number: 8
Strand: -1
Band:
Gene start: 4726604
Gene end: 4738557
  
Corresponding Affymetrix probe sets: Gga.5834.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000052601
Ensembl peptide - ENSGALP00000060934
Ensembl peptide - ENSGALP00000059841
NCBI entrez gene - 770513     See in Manteia.
RefSeq - XM_001233851
swissprot - A0A1L1RQ58
swissprot - A0A1L1RM36
swissprot - A0A1D5PIG8
Ensembl - ENSGALG00000031381
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 vamp4ENSDARG00000043510Danio rerio
 VAMP4ENSG00000117533Homo sapiens
 Vamp4ENSMUSG00000026696Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
VAMP1 / vesicle associated membrane protein 1 / P23763* / Q62442*ENSGALG0000002295523
VAMP3 / vesicle associated membrane protein 3 / P63024* / Q15836*ENSGALG0000000057923
ENSGALG0000003035020


Protein motifs (from Interpro)
Interpro ID Name
 IPR001388  Synaptobrevin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000226 microtubule cytoskeleton organization IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0035493 SNARE complex assembly IEA
 biological_processGO:0090161 Golgi ribbon formation IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0009986 cell surface IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
Retrograde transport at the Trans-Golgi-Network
Cargo recognition for clathrin-mediated endocytosis
Clathrin-mediated endocytosis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000007541 STX16 / Q8BVI5* / O14662* / syntaxin 16* / STX16-NPEPL1* / STX16-NPEPL1 readthrough (NMD candidate)*  / complex
 ENSGALG00000001055 NSF / P46459* / P46460* / Vesicle-fusing ATPase * / N-ethylmaleimide sensitive factor, vesicle fusing ATPase*  / reaction / complex
 ENSGALG00000008880 VTI1A / vesicle transport through interaction with t-SNAREs 1A / O89116* / Q96AJ9*  / complex
 ENSGALG00000003880 STX6 / Q5ZL19 / Syntaxin-6 / O43752* / Q9JKK1*  / complex






 

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