ENSGALG00000008880


Gallus gallus

Features
Gene ID: ENSGALG00000008880
  
Biological name :VTI1A
  
Synonyms : vesicle transport through interaction with t-SNAREs 1A / VTI1A
  
Possible biological names infered from orthology : O89116 / Q96AJ9
  
Species: Gallus gallus
  
Chr. number: 6
Strand: 1
Band:
Gene start: 26754954
Gene end: 27004317
  
Corresponding Affymetrix probe sets: Gga.13716.1.A1_at (Chicken Array)   Gga.13716.1.S1_at (Chicken Array)   GgaAffx.5577.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000014415
Ensembl peptide - ENSGALP00000059444
Ensembl peptide - ENSGALP00000055589
Ensembl peptide - ENSGALP00000045474
NCBI entrez gene - 770885     See in Manteia.
RefSeq - XM_015288701
RefSeq - XM_015288707
RefSeq - XM_015288703
RefSeq - XM_015288702
RefSeq - NM_001277400
RefSeq - NM_001277401
RefSeq Peptide - NP_001264329
RefSeq Peptide - NP_001264330
swissprot - E1BYU6
swissprot - A0A1D5NYL6
swissprot - A0A1D5PRR1
swissprot - A0A1L1RKZ9
Ensembl - ENSGALG00000008880
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 vti1aENSDARG00000045065Danio rerio
 VTI1AENSG00000151532Homo sapiens
 Vti1aENSMUSG00000024983Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
VTI1B / vesicle transport through interaction with t-SNAREs 1B / Q9UEU0*ENSGALG0000000952628


Protein motifs (from Interpro)
Interpro ID Name
 IPR000727  Target SNARE coiled-coil homology domain
 IPR007705  Vesicle transport v-SNARE, N-terminal
 IPR010989  SNARE


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006623 protein targeting to vacuole IBA
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0006888 ER to Golgi vesicle-mediated transport IBA
 biological_processGO:0006891 intra-Golgi vesicle-mediated transport IBA
 biological_processGO:0006896 Golgi to vacuole transport IBA
 biological_processGO:0006914 autophagy IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0042147 retrograde transport, endosome to Golgi IBA
 biological_processGO:0048280 vesicle fusion with Golgi apparatus IBA
 biological_processGO:0050882 voluntary musculoskeletal movement IEA
 biological_processGO:0090161 Golgi ribbon formation IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005776 autophagosome IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IBA
 cellular_componentGO:0005794 Golgi apparatus IBA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0012507 ER to Golgi transport vesicle membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0031201 SNARE complex IBA
 cellular_componentGO:0031902 late endosome membrane IBA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 molecular_functionGO:0000149 SNARE binding IBA
 molecular_functionGO:0005484 SNAP receptor activity IBA


Pathways (from Reactome)
Pathway description
Intra-Golgi traffic
Retrograde transport at the Trans-Golgi-Network


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000001055 NSF / P46459* / P46460* / Vesicle-fusing ATPase * / N-ethylmaleimide sensitive factor, vesicle fusing ATPase*  / complex / reaction
 ENSGALG00000003880 STX6 / Q5ZL19 / Syntaxin-6 / O43752* / Q9JKK1*  / complex
 ENSGALG00000007541 STX16 / Q8BVI5* / O14662* / syntaxin 16* / STX16-NPEPL1* / STX16-NPEPL1 readthrough (NMD candidate)*  / complex
 ENSGALG00000000579 VAMP3 / vesicle associated membrane protein 3 / P63024* / Q15836*  / complex
 ENSGALG00000031381 VAMP4 / vesicle associated membrane protein 4 / O70480* / O75379*  / complex






 

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