ENSGALG00000000579


Gallus gallus

Features
Gene ID: ENSGALG00000000579
  
Biological name :VAMP3
  
Synonyms : VAMP3 / vesicle associated membrane protein 3
  
Possible biological names infered from orthology : P63024 / Q15836
  
Species: Gallus gallus
  
Chr. number: 21
Strand: -1
Band:
Gene start: 292093
Gene end: 295858
  
Corresponding Affymetrix probe sets: Gga.9781.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000034600
NCBI entrez gene - 419368     See in Manteia.
RefSeq - NM_001039489
RefSeq Peptide - NP_001034578
swissprot - F1P4I3
Ensembl - ENSGALG00000000579
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 vamp3ENSDARG00000070161Danio rerio
 VAMP3ENSG00000049245Homo sapiens
 Vamp3ENSMUSG00000028955Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
VAMP1 / vesicle associated membrane protein 1 / P23763* / Q62442*ENSGALG0000002295565
ENSGALG0000003035062
VAMP4 / vesicle associated membrane protein 4 / O70480* / O75379*ENSGALG0000003138132


Protein motifs (from Interpro)
Interpro ID Name
 IPR001388  Synaptobrevin
 IPR016444  Synaptobrevin/Vesicle-associated membrane protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001921 positive regulation of receptor recycling IEA
 biological_processGO:0006887 exocytosis IBA
 biological_processGO:0006906 vesicle fusion IBA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0017156 calcium ion regulated exocytosis IEA
 biological_processGO:0034446 substrate adhesion-dependent cell spreading IEA
 biological_processGO:0035493 SNARE complex assembly IEA
 biological_processGO:0042147 retrograde transport, endosome to Golgi IEA
 biological_processGO:0043001 Golgi to plasma membrane protein transport IEA
 biological_processGO:0071346 cellular response to interferon-gamma IEA
 biological_processGO:1903531 negative regulation of secretion by cell IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0009986 cell surface IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030136 clathrin-coated vesicle IEA
 cellular_componentGO:0030141 secretory granule IEA
 cellular_componentGO:0031201 SNARE complex IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 cellular_componentGO:0045335 phagocytic vesicle IEA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IEA
 cellular_componentGO:0055037 recycling endosome IEA
 molecular_functionGO:0000149 SNARE binding IBA
 molecular_functionGO:0005484 SNAP receptor activity IBA


Pathways (from Reactome)
Pathway description
Retrograde transport at the Trans-Golgi-Network
Cargo recognition for clathrin-mediated endocytosis
Clathrin-mediated endocytosis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000001055 NSF / P46459* / P46460* / Vesicle-fusing ATPase * / N-ethylmaleimide sensitive factor, vesicle fusing ATPase*  / complex / reaction
 ENSGALG00000008880 VTI1A / vesicle transport through interaction with t-SNAREs 1A / O89116* / Q96AJ9*  / complex
 ENSGALG00000016579 RAB9A / RAB9A, member RAS oncogene family / Rab9* / Q9R0M6* / P51151* / RAB9, member RAS oncogene family*  / complex
 ENSGALG00000007541 STX16 / Q8BVI5* / O14662* / syntaxin 16* / STX16-NPEPL1* / STX16-NPEPL1 readthrough (NMD candidate)*  / complex
 ENSGALG00000011621 IGF2R / cation-independent mannose-6-phosphate receptor precursor / P11717* / Q07113* / insulin like growth factor 2 receptor* / Cation-independent mannose-6-phosphate receptor *  / complex
 ENSGALG00000031681 M6PR / mannose-6-phosphate receptor, cation dependent / P20645* / P24668* / Cation-dependent mannose-6-phosphate receptor *  / complex






 

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