ENSGALG00000003880


Gallus gallus

Features
Gene ID: ENSGALG00000003880
  
Biological name :STX6
  
Synonyms : Q5ZL19 / STX6 / Syntaxin-6
  
Possible biological names infered from orthology : O43752 / Q9JKK1
  
Species: Gallus gallus
  
Chr. number: 8
Strand: 1
Band:
Gene start: 5822526
Gene end: 5836519
  
Corresponding Affymetrix probe sets: GgaAffx.12018.1.S1_at (Chicken Array)   GgaAffx.12018.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000043666
Ensembl peptide - ENSGALP00000006160
NCBI entrez gene - 424413     See in Manteia.
RefSeq - NM_001006531
RefSeq Peptide - NP_001006531
swissprot - Q5ZL19
swissprot - A0A1D5NTK9
Ensembl - ENSGALG00000003880
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 stx6ENSDARG00000042742Danio rerio
 STX6ENSG00000135823Homo sapiens
 Stx6ENSMUSG00000026470Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000727  Target SNARE coiled-coil homology domain
 IPR006012  Syntaxin/epimorphin, conserved site
 IPR010989  SNARE
 IPR015260  Syntaxin 6, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0006906 vesicle fusion IEA
 biological_processGO:0007032 endosome organization IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0032456 endocytic recycling IEA
 biological_processGO:0032880 regulation of protein localization IEA
 biological_processGO:0042147 retrograde transport, endosome to Golgi IEA
 biological_processGO:0048193 Golgi vesicle transport IEA
 biological_processGO:0048278 vesicle docking IBA
 biological_processGO:0061025 membrane fusion IEA
 biological_processGO:0090161 Golgi ribbon formation IEA
 biological_processGO:1903827 regulation of cellular protein localization IEA
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005769 early endosome IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005802 trans-Golgi network IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0012505 endomembrane system IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0031201 SNARE complex IEA
 cellular_componentGO:0032588 trans-Golgi network membrane IEA
 cellular_componentGO:0045335 phagocytic vesicle IEA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IEA
 molecular_functionGO:0000149 SNARE binding IBA
 molecular_functionGO:0005484 SNAP receptor activity IEA
 molecular_functionGO:0019905 syntaxin binding IEA


Pathways (from Reactome)
Pathway description
Intra-Golgi traffic
Retrograde transport at the Trans-Golgi-Network


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000007541 STX16 / Q8BVI5* / O14662* / syntaxin 16* / STX16-NPEPL1* / STX16-NPEPL1 readthrough (NMD candidate)*  / complex
 ENSGALG00000001055 NSF / P46459* / P46460* / Vesicle-fusing ATPase * / N-ethylmaleimide sensitive factor, vesicle fusing ATPase*  / reaction / complex
 ENSGALG00000008880 VTI1A / vesicle transport through interaction with t-SNAREs 1A / O89116* / Q96AJ9*  / complex
 ENSGALG00000031381 VAMP4 / vesicle associated membrane protein 4 / O70480* / O75379*  / complex






 

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