ENSDARG00000024116


Danio rerio

Features
Gene ID: ENSDARG00000024116
  
Biological name :vamp8
  
Synonyms : vamp8 / vesicle-associated membrane protein 8 (endobrevin)
  
Possible biological names infered from orthology : Q9BV40 / vesicle associated membrane protein 8
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 28271412
Gene end: 28279364
  
Corresponding Affymetrix probe sets: Dr.16802.1.S1_at (Zebrafish Array)   NM_199759_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000032940
NCBI entrez gene - 327007     See in Manteia.
RefSeq - NM_199759
RefSeq Peptide - NP_956053
swissprot - Q7ZUC1
ZFIN ID - ZDB-GENE-030131-5215
Ensembl - ENSDARG00000024116
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 VAMP8ENSG00000118640Homo sapiens
 Vamp8ENSMUSG00000050732Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:ch73-234b20.5ENSDARG0000008699634
vamp3 / vesicle-associated membrane protein 3 (cellubrevin) / P63024* / Q15836* / vesicle associated membrane protein 3*ENSDARG0000007016131
vamp2 / vesicle-associated membrane protein 2ENSDARG0000005687728
vamp1 / vesicle-associated membrane protein 1 / P23763* / Q62442*ENSDARG0000003128325
zgc:92912 / VAMP1* / P23763* / Q62442* / vesicle associated membrane protein 1*ENSDARG0000009757625
vamp4 / vesicle-associated membrane protein 4 / O70480* / O75379*ENSDARG0000004351023


Protein motifs (from Interpro)
Interpro ID Name
 IPR001388  Synaptobrevin
 IPR016444  Synaptobrevin/Vesicle-associated membrane protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006887 exocytosis IBA
 biological_processGO:0006906 vesicle fusion IBA
 biological_processGO:0016192 vesicle-mediated transport IEA
 cellular_componentGO:0008021 synaptic vesicle IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0031201 SNARE complex IBA
 molecular_functionGO:0000149 SNARE binding IBA
 molecular_functionGO:0005484 SNAP receptor activity IBA


Pathways (from Reactome)
Pathway description
Clathrin derived vesicle budding
Lysosome Vesicle Biogenesis
Golgi Associated Vesicle Biogenesis
Neutrophil degranulation
Cargo recognition for clathrin-mediated endocytosis
Clathrin-mediated endocytosis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000052518 stx4 / syntaxin 4 / Stx4a* / P70452* / Q12846*  / reaction / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr