ENSDARG00000045027


Danio rerio

Features
Gene ID: ENSDARG00000045027
  
Biological name :rab9a
  
Synonyms : rab9a / RAB9A, member RAS oncogene family
  
Possible biological names infered from orthology : P51151 / Q9R0M6 / Rab9 / RAB9, member RAS oncogene family
  
Species: Danio rerio
  
Chr. number: 9
Strand: 1
Band:
Gene start: 54686686
Gene end: 54704498
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000066197
Ensembl peptide - ENSDARP00000153421
NCBI entrez gene - 751756     See in Manteia.
RefSeq - NM_001242974
RefSeq - NM_001045466
RefSeq Peptide - NP_001038931
RefSeq Peptide - NP_001229903
swissprot - Q0P458
ZFIN ID - ZDB-GENE-060825-293
Ensembl - ENSDARG00000045027
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RAB9AENSGALG00000016579Gallus gallus
 RAB9AENSG00000123595Homo sapiens
 Rab9ENSMUSG00000079316Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rab9b / RAB9B, member RAS oncogene family / Q8BHH2* / Q9NP90*ENSDARG0000010339170
zgc:91909ENSDARG0000002128751
rab7 / RAB7, member RAS oncogene family / RAB7A* / P51150* / P51149* / RAB7A, member RAS oncogene family*ENSDARG0000002049751
zgc:100918ENSDARG0000008724350
si:dkey-13a21.4ENSDARG0000002609846
rab38c / RAB38c, member of RAS oncogene familyENSDARG0000007471935
rab32b / RAB32b, member RAS oncogene familyENSDARG0000004116533
rab23 / RAB23, member RAS oncogene family / Q9ULC3*ENSDARG0000000415132
rab32a / RAB32a, member RAS oncogene family / RAB32* / Q9CZE3* / Q13637* / RAB32, member RAS oncogene family*ENSDARG0000002903632
zgc:162171ENSDARG0000003649931
rab38b / RAB38b, member of RAS oncogene family / RAB38* / P57729* / RAB38, member RAS oncogene family*ENSDARG0000011288930


Protein motifs (from Interpro)
Interpro ID Name
 IPR001806  Small GTPase superfamily
 IPR005225  Small GTP-binding protein domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0042147 retrograde transport, endosome to Golgi IBA
 cellular_componentGO:0005829 cytosol IEA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
Retrograde transport at the Trans-Golgi-Network
RAB geranylgeranylation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000018432 m6pr / mannose-6-phosphate receptor (cation dependent) / P20645* / P24668* / Cation-dependent mannose-6-phosphate receptor *  / complex
 ENSDARG00000099258 vps52 / vacuolar protein sorting 52 homolog (S. cerevisiae) / Q8C754* / Q8N1B4* / VPS52, GARP complex subunit*  / reaction
 ENSDARG00000069324 vps53 / vacuolar protein sorting 53 homolog (S. cerevisiae) / Q5VIR6* / Q8CCB4* / VPS53, GARP complex subunit*  / reaction
 ENSDARG00000056122 gdi1 / GDP dissociation inhibitor 1 / P31150* / P50396* / Rab GDP dissociation inhibitor alpha *  / complex
 ENSDARG00000006094 igf2r / insulin-like growth factor 2 receptor / P11717* / Q07113* / Cation-independent mannose-6-phosphate receptor *  / complex
 ENSDARG00000045065 vti1a / vesicle transport through interaction with t-SNAREs 1A / O89116* / Q96AJ9*  / reaction
 ENSDARG00000075030 stx10 / syntaxin 10 / O60499*  / reaction
 ENSDARG00000070161 vamp3 / vesicle-associated membrane protein 3 (cellubrevin) / P63024* / Q15836* / vesicle associated membrane protein 3*  / complex
 ENSDARG00000003307 stx16 / syntaxin 16 / Q8BVI5* / O14662* / STX16-NPEPL1* / STX16-NPEPL1 readthrough (NMD candidate)*  / reaction
 ENSDARG00000112165 Q6GQN7 / rabepk / Rab9 effector protein with kelch motifs / Q7Z6M1*  / complex






 

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