ENSDARG00000004151


Danio rerio

Features
Gene ID: ENSDARG00000004151
  
Biological name :rab23
  
Synonyms : rab23 / RAB23, member RAS oncogene family
  
Possible biological names infered from orthology : Q9ULC3
  
Species: Danio rerio
  
Chr. number: 13
Strand: 1
Band:
Gene start: 1381953
Gene end: 1395002
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000002531
NCBI entrez gene - 553778     See in Manteia.
RefSeq - NM_001020743
RefSeq Peptide - NP_001018579
swissprot - B8A453
ZFIN ID - ZDB-GENE-050522-328
Ensembl - ENSDARG00000004151
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RAB23ENSGALG00000016279Gallus gallus
 RAB23ENSG00000112210Homo sapiens
 Rab23ENSMUSG00000004768Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:dkey-13a21.4ENSDARG0000002609828
rab9a / RAB9A, member RAS oncogene family / Rab9* / Q9R0M6* / P51151* / RAB9, member RAS oncogene family*ENSDARG0000004502727
rab7 / RAB7, member RAS oncogene family / RAB7A* / P51150* / P51149* / RAB7A, member RAS oncogene family*ENSDARG0000002049727
zgc:100918ENSDARG0000008724327
zgc:91909ENSDARG0000002128727
rab38c / RAB38c, member of RAS oncogene familyENSDARG0000007471927
rab32a / RAB32a, member RAS oncogene family / RAB32* / Q9CZE3* / Q13637* / RAB32, member RAS oncogene family*ENSDARG0000002903627
rab9b / RAB9B, member RAS oncogene family / Q8BHH2* / Q9NP90*ENSDARG0000010339126
rab38b / RAB38b, member of RAS oncogene family / RAB38* / P57729* / RAB38, member RAS oncogene family*ENSDARG0000011288926
zgc:162171ENSDARG0000003649926
rab32b / RAB32b, member RAS oncogene familyENSDARG0000004116525


Protein motifs (from Interpro)
Interpro ID Name
 IPR001806  Small GTPase superfamily
 IPR005225  Small GTP-binding protein domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR034114  Ras-related protein Rab-23


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000045 autophagosome assembly IBA
 biological_processGO:0003140 determination of left/right asymmetry in lateral mesoderm IMP
 biological_processGO:0035469 determination of pancreatic left/right asymmetry IMP
 biological_processGO:0061371 determination of heart left/right asymmetry IMP
 biological_processGO:0071910 determination of liver left/right asymmetry IMP
 cellular_componentGO:0005776 autophagosome IBA
 cellular_componentGO:0010008 endosome membrane IBA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
RAB geranylgeranylation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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