ENSDARG00000099258


Danio rerio

Features
Gene ID: ENSDARG00000099258
  
Biological name :vps52
  
Synonyms : vacuolar protein sorting 52 homolog (S. cerevisiae) / vps52
  
Possible biological names infered from orthology : Q8C754 / Q8N1B4 / VPS52, GARP complex subunit
  
Species: Danio rerio
  
Chr. number: 19
Strand: 1
Band:
Gene start: 18627100
Gene end: 18648945
  
Corresponding Affymetrix probe sets: Dr.12099.1.A1_at (Zebrafish Array)   Dr.1598.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000140259
NCBI entrez gene - 556724     See in Manteia.
swissprot - A0A0R4IY52
ZFIN ID - ZDB-GENE-010430-2
Ensembl - ENSDARG00000099258
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 VPS52ENSG00000223501Homo sapiens
 Vps52ENSMUSG00000024319Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007258  Vps52


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
Retrograde transport at the Trans-Golgi-Network


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000018432 m6pr / mannose-6-phosphate receptor (cation dependent) / P20645* / P24668* / Cation-dependent mannose-6-phosphate receptor *  / reaction
 ENSDARG00000045027 rab9a / RAB9A, member RAS oncogene family / Rab9* / Q9R0M6* / P51151* / RAB9, member RAS oncogene family*  / reaction
 ENSDARG00000006094 igf2r / insulin-like growth factor 2 receptor / P11717* / Q07113* / Cation-independent mannose-6-phosphate receptor *  / reaction
 ENSDARG00000045065 vti1a / vesicle transport through interaction with t-SNAREs 1A / O89116* / Q96AJ9*  / reaction
 ENSDARG00000075030 stx10 / syntaxin 10 / O60499*  / reaction
 ENSDARG00000070161 vamp3 / vesicle-associated membrane protein 3 (cellubrevin) / P63024* / Q15836* / vesicle associated membrane protein 3*  / reaction
 ENSDARG00000003307 stx16 / syntaxin 16 / Q8BVI5* / O14662* / STX16-NPEPL1* / STX16-NPEPL1 readthrough (NMD candidate)*  / reaction
 ENSDARG00000069324 vps53 / vacuolar protein sorting 53 homolog (S. cerevisiae) / Q5VIR6* / Q8CCB4* / VPS53, GARP complex subunit*  / complex
 ENSDARG00000112165 Q6GQN7 / rabepk / Rab9 effector protein with kelch motifs / Q7Z6M1*  / reaction






 

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