ENSG00000223501


Homo sapiens

Features
Gene ID: ENSG00000223501
  
Biological name :VPS52
  
Synonyms : Q8N1B4 / VPS52 / VPS52, GARP complex subunit
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 6
Strand: -1
Band: p21.32
Gene start: 33250272
Gene end: 33272047
  
Corresponding Affymetrix probe sets: 214585_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000409952
Ensembl peptide - ENSP00000436612
NCBI entrez gene - 6293     See in Manteia.
OMIM - 603443
RefSeq - NM_022553
RefSeq - XM_017011178
RefSeq - NM_001289174
RefSeq - NM_001289175
RefSeq - NM_001289176
RefSeq - XM_011514797
RefSeq - XM_011514798
RefSeq - XM_011514799
RefSeq - XM_017011177
RefSeq Peptide - NP_001276103
RefSeq Peptide - NP_001276104
RefSeq Peptide - NP_001276105
RefSeq Peptide - NP_072047
swissprot - Q8N1B4
swissprot - E9PI03
swissprot - Q4VXZ2
Ensembl - ENSG00000223501
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 vps52ENSDARG00000099258Danio rerio
 Vps52ENSMUSG00000024319Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007258  Vps52


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006896 Golgi to vacuole transport IBA
 biological_processGO:0007041 lysosomal transport IDA
 biological_processGO:0010668 ectodermal cell differentiation IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0032456 endocytic recycling IMP
 biological_processGO:0042147 retrograde transport, endosome to Golgi IBA
 biological_processGO:0048611 embryonic ectodermal digestive tract development IEA
 cellular_componentGO:0000938 GARP complex IDA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0010008 endosome membrane IEA
 cellular_componentGO:0016020 membrane IDA
 cellular_componentGO:0032588 trans-Golgi network membrane TAS
 cellular_componentGO:0048471 perinuclear region of cytoplasm IDA
 cellular_componentGO:0055037 recycling endosome IEA
 cellular_componentGO:1990745 EARP complex IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0017137 Rab GTPase binding IBA
 molecular_functionGO:0019905 syntaxin binding IPI


Pathways (from Reactome)
Pathway description
Retrograde transport at the Trans-Golgi-Network


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000003056 M6PR / P20645 / mannose-6-phosphate receptor, cation dependent  / reaction
 ENSG00000049245 VAMP3 / Q15836 / vesicle associated membrane protein 3  / reaction
 ENSG00000123595 RAB9A / P51151 / RAB9A, member RAS oncogene family  / reaction
 ENSG00000104915 STX10 / O60499 / syntaxin 10  / reaction
 ENSG00000136933 Q7Z6M1 / RABEPK / Rab9 effector protein with kelch motifs  / reaction
 ENSG00000141252 VPS53 / Q5VIR6 / VPS53, GARP complex subunit  / complex
 ENSG00000143952 VPS54 / Q9P1Q0 / VPS54, GARP complex subunit  / complex
 ENSG00000124222 STX16 / O14662 / syntaxin 16  / reaction
 ENSG00000135968 GCC2 / Q8IWJ2 / GRIP and coiled-coil domain containing 2  / reaction
 ENSG00000197081 IGF2R / P11717 / insulin like growth factor 2 receptor  / reaction
 ENSG00000151532 VTI1A / Q96AJ9 / vesicle transport through interaction with t-SNAREs 1A  / reaction
 ENSG00000149823 VPS51 / Q9UID3 / VPS51, GARP complex subunit  / complex






 

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