ENSMUSG00000079316


Mus musculus

Features
Gene ID: ENSMUSG00000079316
  
Biological name :Rab9
  
Synonyms : Q9R0M6 / Rab9 / RAB9, member RAS oncogene family
  
Possible biological names infered from orthology : P51151 / RAB9A / RAB9A, member RAS oncogene family
  
Species: Mus musculus
  
Chr. number: X
Strand: -1
Band: F5
Gene start: 166457253
Gene end: 166479867
  
Corresponding Affymetrix probe sets: 10607832 (MoGene1.0st)   1448391_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000119240
Ensembl peptide - ENSMUSP00000123325
Ensembl peptide - ENSMUSP00000045127
NCBI entrez gene - 56382     See in Manteia.
MGI - MGI:1890695
RefSeq - NM_019773
RefSeq - XM_006528922
RefSeq Peptide - NP_062747
swissprot - A2AFP5
swissprot - Q0PD48
swissprot - Q9R0M6
swissprot - A2AFP4
Ensembl - ENSMUSG00000079316
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rab9aENSDARG00000045027Danio rerio
 RAB9AENSGALG00000016579Gallus gallus
 RAB9AENSG00000123595Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Rab9b / Q8BHH2 / RAB9B, member RAS oncogene family / Q9NP90*ENSMUSG0000004346376
Rab7 / P51150 / RAB7, member RAS oncogene family / RAB7A* / P51149* / RAB7A, member RAS oncogene family*ENSMUSG0000007947750
Rab7b / Q8VEA8 / RAB7B, member RAS oncogene family / Q96AH8*ENSMUSG0000005268840
Rab32 / Q9CZE3 / RAB32, member RAS oncogene family / Q13637*ENSMUSG0000001983235
Rab23 / RAB23, member RAS oncogene family / Q9ULC3*ENSMUSG0000000476832
Rab38 / Q8QZZ8 / RAB38, member RAS oncogene family / P57729*ENSMUSG0000003055931
Rab29 / RAB29, member RAS oncogene family / O14966*ENSMUSG0000002643330


Protein motifs (from Interpro)
Interpro ID Name
 IPR001806  Small GTPase superfamily
 IPR005225  Small GTP-binding protein domain
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0032880 regulation of protein localization IEA
 biological_processGO:0042147 retrograde transport, endosome to Golgi IBA
 biological_processGO:0045921 positive regulation of exocytosis IEA
 biological_processGO:0052405 negative regulation by host of symbiont molecular function IEA
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005764 lysosome IEA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005770 late endosome IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030659 cytoplasmic vesicle membrane IEA
 cellular_componentGO:0030670 phagocytic vesicle membrane IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0042470 melanosome IEA
 cellular_componentGO:0045335 phagocytic vesicle ISS
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005525 GTP binding IEA
 molecular_functionGO:0019003 GDP binding IEA
 molecular_functionGO:0042802 identical protein binding IPI


Pathways (from Reactome)
Pathway description
Retrograde transport at the Trans-Golgi-Network
RAB geranylgeranylation
RAB GEFs exchange GTP for GDP on RABs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0002169 no phenotype detected "normal, viable and fertile appearance and behavior; indistinguishable from controls" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: BcorGt(W096D07)Wrst/Y
Genetic Background: chimera involves: 129S2/SvPas

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000007458 M6pr / P24668 / Cation-dependent mannose-6-phosphate receptor / P20645* / mannose-6-phosphate receptor, cation dependent*  / complex
 ENSMUSG00000023830 Igf2r / Q07113 / Cation-independent mannose-6-phosphate receptor / P11717* / insulin like growth factor 2 receptor*  / complex
 ENSMUSG00000038456 Q8C4S8 / Dennd2a / DENN domain-containing protein 2A / Q9ULE3* / DENN domain containing 2A*  / reaction
 ENSMUSG00000028955 Vamp3 / P63024 / vesicle-associated membrane protein 3 / Q15836*  / complex
 ENSMUSG00000025531 Chm / choroidermia (RAB escort protein 1) / P24386* / CHM, Rab escort protein 1*  / complex
 ENSMUSG00000015291 Gdi1 / P50396 / Rab GDP dissociation inhibitor alpha / P31150* / GDP dissociation inhibitor 1*  / complex
 ENSMUSG00000021218 Gdi2 / Q61598 / Rab GDP dissociation inhibitor beta / P50395* / GDP dissociation inhibitor 2*  / complex
 ENSMUSG00000078185 Chml / choroideremia-like / P26374* / CHM like, Rab escort protein 2*  / complex
 ENSMUSG00000070953 Q8VCH5 / Rabepk / Rab9 effector protein with kelch motifs / Q7Z6M1*  / complex






 

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