ENSDARG00000015990


Danio rerio

Features
Gene ID: ENSDARG00000015990
  
Biological name :hcfc1a
  
Synonyms : hcfc1a / host cell factor C1a
  
Possible biological names infered from orthology : HCFC1 / Host cell factor 1 HCF N-terminal chain 1 HCF N-terminal chain 2 HCF N-terminal chain 3 HCF N-terminal chain 4 HCF N-terminal chain 5 HCF N-terminal chain 6 HCF C-terminal chain 1 HCF C-terminal chain 2 HCF C-terminal chain 3 HCF C-terminal chain 4 HCF C-terminal chain 5 HCF C-terminal chain 6 / host cell factor C1 / P51610 / Q61191
  
Species: Danio rerio
  
Chr. number: 11
Strand: -1
Band:
Gene start: 25436440
Gene end: 25461336
  
Corresponding Affymetrix probe sets: Dr.20010.15.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000007626
NCBI entrez gene - 564853     See in Manteia.
RefSeq - XM_005169304
RefSeq - XM_009306034
RefSeq - XM_009306035
swissprot - F1Q750
ZFIN ID - ZDB-GENE-030912-10
Ensembl - ENSDARG00000015990
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HCFC1ENSG00000172534Homo sapiens
 Hcfc1ENSMUSG00000031386Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
hcfc1b / host cell factor C1b / HCFC1* / Q61191* / P51610* / host cell factor C1* / Host cell factor 1 HCF N-terminal chain 1 HCF N-terminal chain 2 HCF N-terminal chain 3 HCF N-terminal ch...ENSDARG0000001251980
hcfc2 / host cell factor C2 / Q9Y5Z7*ENSDARG0000005812720
zmp:0000001301ENSDARG000000908866
lztr1 / leucine-zipper-like transcription regulator 1 / Q8N653* / Q9CQ33* / Mus musculus leucine-zipper-like transcriptional regulator, 1 (Lztr1), transcript variant 2, mRNA.*ENSDARG000000159056
Q6GQN7 / rabepk / Rab9 effector protein with kelch motifs / Q7Z6M1*ENSDARG000001121655
krcp / kelch repeat-containing proteinENSDARG000000402244
klhdc10 / kelch domain containing 10 / Q6PAR0* / Q6PID8* / Kelch domain-containing protein 10 *ENSDARG000000077644
zgc:163014ENSDARG000000741004
klhdc3 / kelch domain containing 3 / Q9BQ90*ENSDARG000001027722
klhdc2 / kelch domain containing 2 / Q9Y2U9*ENSDARG000001048642


Protein motifs (from Interpro)
Interpro ID Name
 IPR003961  Fibronectin type III
 IPR006652  Kelch repeat type 1
 IPR013783  Immunoglobulin-like fold
 IPR015915  Kelch-type beta propeller


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0005575 cellular_component ND
 cellular_componentGO:0048188 Set1C/COMPASS complex IEA
 cellular_componentGO:0071339 MLL1 complex IEA


Pathways (from Reactome)
Pathway description
HATs acetylate histones
UCH proteinases


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000042796 yy1a / YY1 transcription factor a / YY1* / ZFP42* / Q96MM3* / P25490* / Q00899* / zinc finger protein 42* / YY1 transcription factor* / ZFP42 zinc finger protein*  / complex
 ENSDARG00000037872 foxk1 / forkhead box K1 / P42128* / P85037* / Forkhead box protein K1 *  / complex
 ENSDARG00000011609 si:ch211-262e15.1 / FOXK2* / Q01167* / Q3UCQ1* / forkhead box K2* / Forkhead box protein K2 *  / complex
 ENSDARG00000030583 foxk2 / forkhead box K2 / Q01167*  / complex
 ENSDARG00000063051 bap1 / BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase) / Q92560* / Q99PU7* / BRCA1 associated protein 1* / Ubiquitin carboxyl-terminal hydrolase BAP1 *  / complex / reaction
 ENSDARG00000027978 yy1b / YY1 transcription factor b / YY1* / ZFP42* / Q96MM3* / P25490* / Q00899* / zinc finger protein 42* / YY1 transcription factor* / ZFP42 zinc finger protein*  / complex
 ENSDARG00000036956 asxl1 / additional sex combs like transcriptional regulator 1 / P59598* / Q8IXJ9* / Putative Polycomb group protein ASXL1 * / additional sex combs like 1, transcriptional regulator*  / complex
 ENSDARG00000076501 asxl2 / additional sex combs like transcriptional regulator 2 / Q76L83* / putative Polycomb group protein ASXL2 isoform 1 * / additional sex combs like 2, transcriptional regulator*  / complex






 

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