ENSDARG00000063051


Danio rerio

Features
Gene ID: ENSDARG00000063051
  
Biological name :bap1
  
Synonyms : bap1 / BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase)
  
Possible biological names infered from orthology : BRCA1 associated protein 1 / Q92560 / Q99PU7 / Ubiquitin carboxyl-terminal hydrolase BAP1
  
Species: Danio rerio
  
Chr. number: 22
Strand: -1
Band:
Gene start: 10591958
Gene end: 10605045
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000086210
Ensembl peptide - ENSDARP00000147485
NCBI entrez gene - 558885     See in Manteia.
RefSeq - NM_001163837
RefSeq - XM_005173970
RefSeq - XM_005173971
RefSeq Peptide - NP_001157309
swissprot - F1QJ12
ZFIN ID - ZDB-GENE-050208-492
Ensembl - ENSDARG00000063051
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 BAP1ENSGALG00000004366Gallus gallus
 BAP1ENSG00000163930Homo sapiens
 Bap1ENSMUSG00000021901Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
uchl5 / ubiquitin carboxyl-terminal hydrolase L5 / Q9WUP7* / Q9Y5K5* / ubiquitin C-terminal hydrolase L5* / ubiquitin carboxyl-terminal esterase L5*ENSDARG0000010340415


Protein motifs (from Interpro)
Interpro ID Name
 IPR001578  Peptidase C12, ubiquitin carboxyl-terminal hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006508 proteolysis IEA
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IEA
 cellular_componentGO:0005622 intracellular IEA
 molecular_functionGO:0004843 thiol-dependent ubiquitin-specific protease activity IEA
 molecular_functionGO:0008233 peptidase activity IEA
 molecular_functionGO:0008234 cysteine-type peptidase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEA


Pathways (from Reactome)
Pathway description
UCH proteinases


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
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 ZFA:0000135 notochord notochord malformed , abnormal
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 ZFA:0000155 somite somite fused with somite , abnormal
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 ZFA:0001114 head head hemorrhagic , abnormal
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 ZFA:0001115 trunk trunk necrotic , abnormal
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 ZFA:0001117 post-vent region post-vent region curled , abnormal
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 ZFA:0001205 Meckel s cartilage Meckels cartilage morphology , abnormal
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 ZFA:0001227 mandibular arch skeleton mandibular arch skeleton decreased size , abnormal
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 ZFA:0001405 ethmoid cartilage ethmoid cartilage shape , abnormal
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 ZFA:0001460 pharyngeal arch cartilage pharyngeal arch cartilage malformed , abnormal
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 ZFA:0009248 neuron neuron hyperplastic , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000015990 hcfc1a / host cell factor C1a / HCFC1* / Q61191* / P51610* / host cell factor C1* / Host cell factor 1 HCF N-terminal chain 1 HCF N-terminal chain 2 HCF N-terminal chain 3 HCF N-terminal ch...  / complex / reaction
 ENSDARG00000042796 yy1a / YY1 transcription factor a / YY1* / ZFP42* / Q96MM3* / P25490* / Q00899* / zinc finger protein 42* / YY1 transcription factor* / ZFP42 zinc finger protein*  / reaction / complex
 ENSDARG00000030583 foxk2 / forkhead box K2 / Q01167*  / complex / reaction
 ENSDARG00000012519 hcfc1b / host cell factor C1b / HCFC1* / Q61191* / P51610* / host cell factor C1* / Host cell factor 1 HCF N-terminal chain 1 HCF N-terminal chain 2 HCF N-terminal chain 3 HCF N-terminal ch...  / reaction / complex
 ENSDARG00000027978 yy1b / YY1 transcription factor b / YY1* / ZFP42* / Q96MM3* / P25490* / Q00899* / zinc finger protein 42* / YY1 transcription factor* / ZFP42 zinc finger protein*  / reaction / complex
 ENSDARG00000036956 asxl1 / additional sex combs like transcriptional regulator 1 / P59598* / Q8IXJ9* / Putative Polycomb group protein ASXL1 * / additional sex combs like 1, transcriptional regulator*  / reaction / complex
 ENSDARG00000011609 si:ch211-262e15.1 / FOXK2* / Q01167* / Q3UCQ1* / forkhead box K2* / Forkhead box protein K2 *  / complex / reaction
 ENSDARG00000076501 asxl2 / additional sex combs like transcriptional regulator 2 / Q76L83* / putative Polycomb group protein ASXL2 isoform 1 * / additional sex combs like 2, transcriptional regulator*  / complex / reaction
 ENSDARG00000037872 foxk1 / forkhead box K1 / P42128* / P85037* / Forkhead box protein K1 *  / complex / reaction






 

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