ENSG00000163930


Homo sapiens

Features
Gene ID: ENSG00000163930
  
Biological name :BAP1
  
Synonyms : BAP1 / BRCA1 associated protein 1 / Q92560
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: -1
Band: p21.1
Gene start: 52401013
Gene end: 52410350
  
Corresponding Affymetrix probe sets: 1555735_a_at (Human Genome U133 Plus 2.0 Array)   201419_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000419709
Ensembl peptide - ENSP00000418320
Ensembl peptide - ENSP00000420647
Ensembl peptide - ENSP00000482839
Ensembl peptide - ENSP00000296288
Ensembl peptide - ENSP00000417132
Ensembl peptide - ENSP00000417776
NCBI entrez gene - 8314     See in Manteia.
OMIM - 603089
RefSeq - XM_017007303
RefSeq - NM_004656
RefSeq - XM_011534149
RefSeq - XM_011534150
RefSeq - XM_011534151
RefSeq - XM_011534152
RefSeq Peptide - NP_004647
swissprot - Q92560
swissprot - Q96TC6
swissprot - C9J7L9
swissprot - F8W6N3
swissprot - F8WEY5
swissprot - H0Y8E8
swissprot - A0A024R305
swissprot - H7C4V7
Ensembl - ENSG00000163930
  
Related genetic diseases (OMIM): 614327 - Tumor predisposition syndrome, 614327
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 bap1ENSDARG00000063051Danio rerio
 BAP1ENSGALG00000004366Gallus gallus
 Bap1ENSMUSG00000021901Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
UCHL5 / Q9Y5K5 / ubiquitin C-terminal hydrolase L5ENSG0000011675016


Protein motifs (from Interpro)
Interpro ID Name
 IPR001578  Peptidase C12, ubiquitin carboxyl-terminal hydrolase
 IPR036959  Peptidase C12, ubiquitin carboxyl-terminal hydrolase superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001558 regulation of cell growth IMP
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006464 cellular protein modification process NAS
 biological_processGO:0006508 proteolysis IEA
 biological_processGO:0006511 ubiquitin-dependent protein catabolic process IEA
 biological_processGO:0008285 negative regulation of cell proliferation TAS
 biological_processGO:0010035 response to inorganic substance IEA
 biological_processGO:0016579 protein deubiquitination IDA
 biological_processGO:0035520 monoubiquitinated protein deubiquitination IDA
 biological_processGO:0035522 monoubiquitinated histone H2A deubiquitination IDA
 biological_processGO:0050727 regulation of inflammatory response IEA
 biological_processGO:0051726 regulation of cell cycle IMP
 biological_processGO:0061519 macrophage homeostasis IEA
 biological_processGO:0071108 protein K48-linked deubiquitination IMP
 biological_processGO:1900015 regulation of cytokine production involved in inflammatory response IEA
 biological_processGO:1903955 positive regulation of protein targeting to mitochondrion IMP
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus TAS
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0035517 PR-DUB complex IDA
 molecular_functionGO:0003682 chromatin binding IDA
 molecular_functionGO:0004843 thiol-dependent ubiquitin-specific protease activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008233 peptidase activity IEA
 molecular_functionGO:0008234 cysteine-type peptidase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEA


Pathways (from Reactome)
Pathway description
UCH proteinases
Recruitment and ATM-mediated phosphorylation of repair and signaling proteins at DNA double strand breaks


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000488 Retinopathy 
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 HP:0000539 Abnormality of refraction 
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 HP:0000541 Detached retina 
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 HP:0000572 Visual loss 
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 HP:0000958 Dry skin 
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 HP:0001480 Freckling 
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 HP:0001595 Hair abnormality 
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 HP:0002071 Extrapyramidal signs 
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 HP:0002858 Meningioma 
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 HP:0002861 Malignant melanoma "A malignant skin tumor of originating from melanocytes, pigment cells normally present in the epidermis and sometimes in the dermis." [HPO:curators]
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 HP:0002894 Pancreatic cancer 
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 HP:0003764 Abnormal or excess nevi 
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 HP:0006753 Increased gastric cancer 
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 HP:0007716 Malignant intraocular melanoma "A malignant melanoma originating within the eye. The tumor originates from the melanocytes in the uvea (which comprises the iris, ciliary body, and choroid)." [HPO:curators]
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 HP:0007902 Vitreous hemorrhage 
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 HP:0007906 Increased intraocular pressure 
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 HP:0008494 Inferior lens subluxation 
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 HP:0010920 Zonular cataract "Zonular cataracts are defined to be cataracts that affect specific regions of the lens." [HPO:probinson, HPO:vkumar, pmid:18035564]
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 HP:0011499 Mydriasis "Abnormal dilatation of the iris." [DDD:ncarter]
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 HP:0011524 Iris melanoma "Malignant tumor of melanocytes affecting the iris." [DDD:ncarter]
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 HP:0012054 Choroidal melanoma "Malignant tumor of melanocytes of the choroid. The classic appearance of choroidal melanoma is a pigmented dome-shaped or collar button-shaped tumor with an associated exudative retinal detachment. Choroidal melanoma is usually pigmented, but can be variably pigmented and even amelanotic (non-pigmented)." [HPO:probinson, pmid:22557869]
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 HP:0012055 Ciliary body melanoma "Malignant tumor of melanocytes of the ciliary body." [HPO:probinson]
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 HP:0012056 Cutaneous melanoma "The presence of a `melanoma` (MPATH:359) of the `skin` (FMA:7163)." [HPO:probinson]
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 HP:0012508 Metamorphopsia "A visual anomaly in which images appear distorted. A grid of straight lines appears wavy and parts of the grid may appear blank." [HPO:probinson]
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 HP:0030078 Lung adenocarcinoma 
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 HP:0030786 Photopsia "Perceived flashes of light." [HPO:probinson, PMID:10506812]
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 HP:0030800 Abnormal visual accommodation "An anomaly in the process of visual accommodation, which is the process of adjustment of the eye to enable sharp vision of objects at different distances. Accommodation is mediated by contraction of the ciliary muscles, which alter the convexity of the lens and, consequently, its refractive power." [HPO:probinson]
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 HP:0100013 Neoplasia of the breast 
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 HP:0100533 Inflammatory abnormality of the eye "Inflammation of the eye, parts of the eye or the periorbital region." [HPO:sdoelken]
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 HP:0100763 Abnormality of the lymphatic system 
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 HP:0200026 ocular pain 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000100811 YY1 / P25490 / YY1 transcription factor  / complex / reaction
 ENSG00000172534 HCFC1 / P51610 / host cell factor C1  / complex / reaction
 ENSG00000138376 BARD1 / Q99728 / BRCA1 associated RING domain 1  / complex / reaction
 ENSG00000171456 ASXL1 / Q8IXJ9 / additional sex combs like 1, transcriptional regulator  / reaction / complex
 ENSG00000141568 FOXK2 / Q01167 / forkhead box K2  / complex / reaction
 ENSG00000164916 FOXK1 / P85037 / forkhead box K1  / complex / reaction
 ENSG00000143970 ASXL2 / Q76L83 / additional sex combs like 2, transcriptional regulator  / complex / reaction
 ENSG00000147162 OGT / O15294 / O-linked N-acetylglucosamine (GlcNAc) transferase  / reaction / complex






 

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