ENSG00000171456


Homo sapiens

Features
Gene ID: ENSG00000171456
  
Biological name :ASXL1
  
Synonyms : additional sex combs like 1, transcriptional regulator / ASXL1 / Q8IXJ9
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 20
Strand: 1
Band: q11.21
Gene start: 32358330
Gene end: 32439319
  
Corresponding Affymetrix probe sets: 212234_at (Human Genome U133 Plus 2.0 Array)   212237_at (Human Genome U133 Plus 2.0 Array)   212238_at (Human Genome U133 Plus 2.0 Array)   242438_at (Human Genome U133 Plus 2.0 Array)   242439_s_at (Human Genome U133 Plus 2.0 Array)   244519_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000495495
Ensembl peptide - ENSP00000495488
Ensembl peptide - ENSP00000496042
Ensembl peptide - ENSP00000305119
Ensembl peptide - ENSP00000364839
Ensembl peptide - ENSP00000364841
Ensembl peptide - ENSP00000438654
Ensembl peptide - ENSP00000451216
Ensembl peptide - ENSP00000480361
Ensembl peptide - ENSP00000480487
Ensembl peptide - ENSP00000481978
Ensembl peptide - ENSP00000493987
Ensembl peptide - ENSP00000494077
Ensembl peptide - ENSP00000494813
Ensembl peptide - ENSP00000495003
Ensembl peptide - ENSP00000495053
NCBI entrez gene - 171023     See in Manteia.
OMIM - 612990
RefSeq - XM_017027706
RefSeq - NM_015338
RefSeq - XM_006723727
RefSeq - XM_006723728
RefSeq - XM_006723730
RefSeq - XM_006723732
RefSeq - XM_011528648
RefSeq - XM_011528652
RefSeq - XM_017027704
RefSeq - XM_017027705
RefSeq - NM_001164603
RefSeq Peptide - NP_001158075
RefSeq Peptide - NP_056153
swissprot - A0A087WWN0
swissprot - Q498B9
swissprot - Q5JWS8
swissprot - Q6P1M8
swissprot - H0YJC9
swissprot - Q76L82
swissprot - Q8IXJ9
Ensembl - ENSG00000171456
  
Related genetic diseases (OMIM): 605039 - Bohring-Opitz syndrome, 605039
  614286 - Myelodysplastic syndrome, somatic, 614286
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 asxl1ENSDARG00000036956Danio rerio
 ASXL1ENSGALG00000006612Gallus gallus
 Asxl1ENSMUSG00000042548Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ASXL3 / Q9C0F0 / additional sex combs like 3, transcriptional regulatorENSG0000014143129
ASXL2 / Q76L83 / additional sex combs like 2, transcriptional regulatorENSG0000014397018


Protein motifs (from Interpro)
Interpro ID Name
 IPR007759  HB1/Asxl, restriction endonuclease HTH domain
 IPR024811  Polycomb protein ASX/ASX-like
 IPR024815  ASX-like protein 1
 IPR026905  Protein ASX-like, PHD domain
 IPR028020  ASX homology domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000902 cell morphogenesis IEA
 biological_processGO:0003007 heart morphogenesis IEA
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0009887 animal organ morphogenesis IEA
 biological_processGO:0016579 protein deubiquitination TAS
 biological_processGO:0030097 hemopoiesis IEA
 biological_processGO:0032526 response to retinoic acid ISS
 biological_processGO:0035359 negative regulation of peroxisome proliferator activated receptor signaling pathway ISS
 biological_processGO:0035522 monoubiquitinated histone H2A deubiquitination IDA
 biological_processGO:0045599 negative regulation of fat cell differentiation ISS
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II ISS
 biological_processGO:0048386 positive regulation of retinoic acid receptor signaling pathway ISS
 biological_processGO:0048534 hematopoietic or lymphoid organ development IEA
 biological_processGO:0048538 thymus development IEA
 biological_processGO:0048539 bone marrow development IEA
 biological_processGO:0048872 homeostasis of number of cells IEA
 biological_processGO:0060348 bone development IEA
 biological_processGO:0060430 lung saccule development IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0035517 PR-DUB complex IDA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003713 transcription coactivator activity ISS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0042974 retinoic acid receptor binding ISS
 molecular_functionGO:0042975 peroxisome proliferator activated receptor binding ISS
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
UCH proteinases


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000023 Inguinal hernia 
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 HP:0000076 Vesicoureteral reflux "Abnormal (retrograde) movement of urine from the bladder into ureters or kidneys related to inadequacy of the valvular mechanism at the ureterovesicular junction or other causes." [HPO:curators]
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 HP:0000077 Abnormality of the kidneys "An abnormality of the kidneys, the paired organs whose primary function is the production of urine." [HPO:curators]
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 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
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 HP:0000187 Broad alveolar ridges 
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 HP:0000189 Narrow palate "Width of the palate more than 2 SD below the mean (objective) or apparently decreased palatal width (subjective)." [pmid:19125428]
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 HP:0000191 Oral frenula 
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 HP:0000204 Cleft lip "A gap in the `upper lip` (FMA:59817). This is a congenital defect resulting from nonfusion of tissues of the lip during embryonal development." [HPO:probinson]
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 HP:0000243 Trigonocephaly 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000276 Long face 
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 HP:0000278 Retrognathia 
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 HP:0000293 Full cheeks 
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 HP:0000294 Low frontal hairline "A condition in which the scalp hair is present at lower than usual areas of the forehead." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000329 Facial hemangioma "Hemangioma, a benign tumor of the vascular endothelial cells, occurring in the face." [HPO:curators]
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 HP:0000341 Narrow forehead "An abnormally reduced side-to-side width of the forehead." [HPO:curators]
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000358 Posteriorly rotated ears "A type of `abnormal location of the ears` (HP:0000357) in which the position of the ears is characterized by posterior rotation (the superior part of the ears is rotated towards the back of the head, and the inferior part of the ears towards the front)." [HPO:probinson]
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 HP:0000365 Hearing loss 
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000444 Beaked nose 
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000488 Retinopathy 
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 HP:0000520 Proptosis 
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 HP:0000545 Myopia 
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 HP:0000582 Upslanting palpebral fissures 
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 HP:0000587 Abnormality of the optic nerve "Abnormality of the optic nerve (also known as cranial nerve II), which transmits visual information from the retina to the brain." [HPO:curators]
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 HP:0000593 Abnormality of the anterior chamber "Abnormality of the anterior chamber, which is the space in the eye that is behind the cornea and in front of the iris." [HPO:curators]
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 HP:0000664 Synophrys "Fusion of the left and right `eyebrow` (FMA:54237)." [HPO:probinson]
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 HP:0000774 Narrow chest 
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 HP:0000926 Platyspondyly 
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 HP:0000960 Sacral dimple "A subtype of `skin dimples` (HP:0010781) presenting as an indentation in the skin of the intergluteal cleft ." [HPO:probinson]
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 HP:0001007 Hirsutism "Abnormally increased hair growth." [HPO:curators]
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 HP:0001052 Nevus flammeus "A congenital vascular malformation consisting of superficial and deep dilated capillaries in the skin which produce a reddish to purplish discolouration of the skin." [HPO:sdoelken]
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 HP:0001159 Syndactyly "Webbing or fusion of the fingers or toes, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers or toes in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0001169 Broad hands 
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 HP:0001182 Tapered fingers 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001305 Dandy-Walker malformation "A congenital brain malformation typically characterized by incomplete formation of the cerebellar vermis, dilation of the fourth ventricle, and enlargement of the posterior fossa. In layman s terms, Dandy Walker malformation is a cyst in the cerebellum (typically symmetrical) that is involved with the fourth ventricle. This may interfere with the body s ability to drain cerebrospinal fluid from the brain, resulting in hydrocephalus. Dandy Walker cysts are formed during early embryonic development, while the brain forms. The cyst in the cerebellum typically has several blood vessels running through it connecting to the brain, thereby prohibiting surgical removal." [HPO:curators]
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 HP:0001373 Joint dislocation "Displacement or malalignment of joints." [HPO:curators]
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 HP:0001376 Decreased mobility of joints 
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 HP:0001428 Somatic mutation 
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 HP:0001508 Failure to thrive 
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 HP:0001511 Intrauterine growth retardation 
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 HP:0001522 Death in infancy 
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 HP:0001561 Polyhydramnios 
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0001631 Atrial septal defect "Atrial septal defect (ASD) is a congenital heart defect that enables blood flow between the left and right atria via the interatrial septum. The three common types of ASD are sinus venosus defects, ostium secundum defects, and ostium primum defects." [HPO:curators]
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 HP:0001732 Abnormality of the pancreas 
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 HP:0001773 Short, broad feet "Abnormally short and wide feet." [HPO:curators]
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 HP:0001831 Brachydactyly (feet) 
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 HP:0001845 Overriding toes "A congenital condition in which a toe is adducted, dorsifelxed, and medially deviated, generally lying over the metatarsal phalangeal joint of the adjacent toe. Usually, the fifth toe is affected." [HPO:curators]
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 HP:0001869 Deep plantar creases 
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 HP:0001883 Talipes 
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 HP:0002020 Gastroesophageal reflux 
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 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0002120 Cerebral cortical atrophy 
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 HP:0002187 Mental retardation, profound "Severe mental retardation is defined as an intelligence quotient (IQ) below 20." [HPO:curators]
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 HP:0002282 Heterotopia 
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 HP:0002365 Hypoplasia of the brainstem 
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 HP:0002558 Supernumerary nipples 
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 HP:0002566 Intestinal malrotation "An abnormality of the intestinal rotation and fixation that normally occurs during the development of the gut. This can lead to volvulus, or twisting of the intestine that causes obstruction and necrosis." [HPO:curators]
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 HP:0002863 Myelodysplasia 
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 HP:0003042 Elbow dislocation "A dislocation affecting the elbow joint, where the radius, ulna, and humerus meet." [HPO:curators]
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 HP:0003049 Ulnar deviation of the wrist 
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 HP:0003083 Dislocated radial head "A dislocation of the head of the radius from its socket in the elbow joint." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004422 Biparietal narrowing "A narrowing of the biparietal diameter (i.e., of the transverse distance between the protuberances of the two parietal bones of the skull)." [HPO:curators]
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 HP:0005026 mesomelic/rhizomelic limb shortening 
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 HP:0005487 Prominent metopic suture "A prominent persistent frontal suture (metopic suture)." [HPO:curators]
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 HP:0006191 Deep palmar creases "An increased depth of the palmar creases." [HPO:curators]
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 HP:0006276 Hyperechogenic pancreas 
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 HP:0006610 Wide intermamillary distance 
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 HP:0007413 Nevus flammeus of the forehead "`Naevus flammeus` (HP:0001052) localised in the skin of the forehead." [HPO:sdoelken]
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 HP:0009465 Ulnar deviation of fingers 
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 HP:0009891 Hypoplasia of the supraorbital ridges "Underdevelopment of the supraorbital ridges." [HPO:curators]
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 HP:0010306 Short thorax "Reduced inferior to superior extent of the thorax." [HPO:curators]
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 HP:0010864 Mental retardation, severe "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 20-34." [HPO:probinson]
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 HP:0011220 Prominent forehead "Forward prominence of the entire forehead, due to protrusion of the frontal bone." [pmid:19125436]
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 HP:0011401 Delayed peripheral myelination "`Delayed` (PATO:0000502) `myelination` (GO:0042552) in the peripheral nervous system." [HPO:probinson]
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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 HP:0012385 Camptodactyly "The distal interphalangeal joint and/or the proximal interphalangeal joint of the fingers or toes cannot be extended to 180 degrees by either active or passive extension." [HPO:probinson]
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 HP:0030680 Abnormality of cardiovascular system morphology "Any structural anomaly of the heart and great vessels." []
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 HP:0100490 Camptodactyly (hands) "Contractures of one ore more joints of the fingers." [HPO:sdoelken]
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 HP:0100874 Thick hair "Increased density of `hairs` (FMA:53667), i.e., and elevanted number of hairs per unit area." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000100811 YY1 / P25490 / YY1 transcription factor  / complex
 ENSG00000141568 FOXK2 / Q01167 / forkhead box K2  / complex
 ENSG00000163930 BAP1 / Q92560 / BRCA1 associated protein 1  / complex / reaction
 ENSG00000147162 OGT / O15294 / O-linked N-acetylglucosamine (GlcNAc) transferase  / complex
 ENSG00000164916 FOXK1 / P85037 / forkhead box K1  / complex
 ENSG00000172534 HCFC1 / P51610 / host cell factor C1  / complex






 

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