ENSG00000172534


Homo sapiens

Features
Gene ID: ENSG00000172534
  
Biological name :HCFC1
  
Synonyms : HCFC1 / host cell factor C1 / P51610
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: X
Strand: -1
Band: q28
Gene start: 153947553
Gene end: 153971807
  
Corresponding Affymetrix probe sets: 202473_x_at (Human Genome U133 Plus 2.0 Array)   202474_s_at (Human Genome U133 Plus 2.0 Array)   231177_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000399589
Ensembl peptide - ENSP00000309555
Ensembl peptide - ENSP00000359001
NCBI entrez gene - 3054     See in Manteia.
OMIM - 300019
RefSeq - XM_017029472
RefSeq - XM_006724816
RefSeq - XM_011531147
RefSeq - XM_011531148
RefSeq - XM_017029471
RefSeq - NM_005334
RefSeq - XM_006724815
RefSeq Peptide - NP_005325
swissprot - H7C1C4
swissprot - A6NEM2
swissprot - P51610
Ensembl - ENSG00000172534
  
Related genetic diseases (OMIM): 309541 - Mental retardation, X-linked 3 (methylmalonic acidemia and homocysteinemia, cblX type ), 309541
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 hcfc1aENSDARG00000015990Danio rerio
 hcfc1bENSDARG00000012519Danio rerio
 Hcfc1ENSMUSG00000031386Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
HCFC2 / Q9Y5Z7 / host cell factor C2ENSG0000011172722
LZTR1 / Q8N653 / leucine zipper like transcription regulator 1ENSG000000999496
KLHDC3 / Q9BQ90 / kelch domain containing 3ENSG000001247025
KLHDC1 / Q8N7A1 / kelch domain containing 1ENSG000001977765
KLHDC2 / Q9Y2U9 / kelch domain containing 2ENSG000001655165
Q7Z6M1 / RABEPK / Rab9 effector protein with kelch motifsENSG000001369335
Q6PID8 / KLHDC10 / kelch domain containing 10ENSG000001286074


Protein motifs (from Interpro)
Interpro ID Name
 IPR003961  Fibronectin type III
 IPR006652  Kelch repeat type 1
 IPR013783  Immunoglobulin-like fold
 IPR015915  Kelch-type beta propeller
 IPR036116  Fibronectin type III superfamily
 IPR037293  Galactose oxidase, central domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IDA
 biological_processGO:0006366 transcription by RNA polymerase II TAS
 biological_processGO:0007005 mitochondrion organization TAS
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0010628 positive regulation of gene expression IDA
 biological_processGO:0016032 viral process IEA
 biological_processGO:0016579 protein deubiquitination TAS
 biological_processGO:0019046 release from viral latency NAS
 biological_processGO:0043254 regulation of protein complex assembly IDA
 biological_processGO:0043981 histone H4-K5 acetylation IDA
 biological_processGO:0043982 histone H4-K8 acetylation IDA
 biological_processGO:0043984 histone H4-K16 acetylation IDA
 biological_processGO:0045787 positive regulation of cell cycle TAS
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IMP
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0050821 protein stabilization IDA
 biological_processGO:0071407 cellular response to organic cyclic compound IEA
 cellular_componentGO:0000123 histone acetyltransferase complex IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005671 Ada2/Gcn5/Ada3 transcription activator complex IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0016020 membrane HDA
 cellular_componentGO:0030424 axon IEA
 cellular_componentGO:0030425 dendrite IEA
 cellular_componentGO:0032991 protein-containing complex IDA
 cellular_componentGO:0043025 neuronal cell body IDA
 cellular_componentGO:0048188 Set1C/COMPASS complex IEA
 cellular_componentGO:0070461 SAGA-type complex IDA
 cellular_componentGO:0071339 MLL1 complex IEA
 molecular_functionGO:0001205 transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific DNA binding IEA
 molecular_functionGO:0003682 chromatin binding IDA
 molecular_functionGO:0003700 DNA-binding transcription factor activity NAS
 molecular_functionGO:0003713 transcription coactivator activity IMP
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0030674 protein binding, bridging IPI
 molecular_functionGO:0033613 activating transcription factor binding IPI
 molecular_functionGO:0042802 identical protein binding IPI
 molecular_functionGO:0043995 histone acetyltransferase activity (H4-K5 specific) IDA
 molecular_functionGO:0043996 histone acetyltransferase activity (H4-K8 specific) IDA
 molecular_functionGO:0045296 cadherin binding IDA
 molecular_functionGO:0046972 histone acetyltransferase activity (H4-K16 specific) IDA


Pathways (from Reactome)
Pathway description
Transcriptional activation of mitochondrial biogenesis
HATs acetylate histones
UCH proteinases


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000248 Brachycephaly "Brachycephaly refers to a short, wide head, which is often caused by premature closure of both coronal sutures." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001419 X-linked recessive inheritance "A mode of inheritance that is observed for recessive traits related to a gene encoded on the X chromosome. In the context of medical genetics, X-linked recessive disorders manifest in males (who have one copy of the X chromosome and are thus hemizygotes), but generally not in female heterozygotes who have one mutant and one normal allele." [HPO:curators]
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 HP:0001508 Failure to thrive 
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 HP:0002072 Chorea "Chorea (Greek for dance ) refers to widespread arrhythmic involuntary movements of a forcible, jerky and restless fashion." [HPO:curators]
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 HP:0002156 Homocystinuria 
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 HP:0002305 Athetosis "Athetosis (from the Greek word for changeable or unfixed ) refers to an inability to sustain the muscles of the fingers, toes, tongue, or any other group of muscles in a fixed position. Instead, posture is interrupted by slow, purposeless involuntary movements." [HPO:curators]
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 HP:0002521 Hypsarrhythmia "Hypsarrhythmia is abnormal interictal high amplitude waves and a background of irregular spikes demonstrated by electroencephalography (EEG)." [HPO:curators]
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 HP:0002912 Methylmalonic acidemia 
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 HP:0003593 Early onset 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0012120 Methylmalonic aciduria "Increased concentration of `methylmalonic acid` (CHEBI:30860) in the urine." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000100811 YY1 / P25490 / YY1 transcription factor  / complex
 ENSG00000163930 BAP1 / Q92560 / BRCA1 associated protein 1  / complex / reaction
 ENSG00000171456 ASXL1 / Q8IXJ9 / additional sex combs like 1, transcriptional regulator  / complex
 ENSG00000141568 FOXK2 / Q01167 / forkhead box K2  / complex
 ENSG00000164916 FOXK1 / P85037 / forkhead box K1  / complex
 ENSG00000143970 ASXL2 / Q76L83 / additional sex combs like 2, transcriptional regulator  / complex
 ENSG00000147162 OGT / O15294 / O-linked N-acetylglucosamine (GlcNAc) transferase  / complex






 

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