ENSDARG00000012519


Danio rerio

Features
Gene ID: ENSDARG00000012519
  
Biological name :hcfc1b
  
Synonyms : hcfc1b / host cell factor C1b
  
Possible biological names infered from orthology : HCFC1 / Host cell factor 1 HCF N-terminal chain 1 HCF N-terminal chain 2 HCF N-terminal chain 3 HCF N-terminal chain 4 HCF N-terminal chain 5 HCF N-terminal chain 6 HCF C-terminal chain 1 HCF C-terminal chain 2 HCF C-terminal chain 3 HCF C-terminal chain 4 HCF C-terminal chain 5 HCF C-terminal chain 6 / host cell factor C1 / P51610 / Q61191
  
Species: Danio rerio
  
Chr. number: 8
Strand: -1
Band:
Gene start: 7506827
Gene end: 7567815
  
Corresponding Affymetrix probe sets: Dr.13068.1.S1_at (Zebrafish Array)   Dr.25613.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000121690
NCBI entrez gene - 565206     See in Manteia.
RefSeq - XM_005166699
RefSeq - XM_021478282
RefSeq - NM_001128537
RefSeq Peptide - NP_001122009
swissprot - A8WIP5
ZFIN ID - ZDB-GENE-030131-2411
Ensembl - ENSDARG00000012519
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 HCFC1ENSG00000172534Homo sapiens
 Hcfc1ENSMUSG00000031386Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
hcfc1a / host cell factor C1a / HCFC1* / Q61191* / P51610* / host cell factor C1* / Host cell factor 1 HCF N-terminal chain 1 HCF N-terminal chain 2 HCF N-terminal chain 3 HCF N-terminal ch...ENSDARG0000001599072
hcfc2 / host cell factor C2 / Q9Y5Z7*ENSDARG0000005812718
lztr1 / leucine-zipper-like transcription regulator 1 / Q8N653* / Q9CQ33* / Mus musculus leucine-zipper-like transcriptional regulator, 1 (Lztr1), transcript variant 2, mRNA.*ENSDARG000000159056
zmp:0000001301ENSDARG000000908865
Q6GQN7 / rabepk / Rab9 effector protein with kelch motifs / Q7Z6M1*ENSDARG000001121654
krcp / kelch repeat-containing proteinENSDARG000000402244
klhdc10 / kelch domain containing 10 / Q6PAR0* / Q6PID8* / Kelch domain-containing protein 10 *ENSDARG000000077643
zgc:163014ENSDARG000000741003
klhdc2 / kelch domain containing 2 / Q9Y2U9*ENSDARG000001048642
klhdc3 / kelch domain containing 3 / Q9BQ90*ENSDARG000001027722


Protein motifs (from Interpro)
Interpro ID Name
 IPR003961  Fibronectin type III
 IPR006652  Kelch repeat type 1
 IPR013783  Immunoglobulin-like fold
 IPR015915  Kelch-type beta propeller


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002062 chondrocyte differentiation IMP
 biological_processGO:0048703 embryonic viscerocranium morphogenesis IMP
 cellular_componentGO:0048188 Set1C/COMPASS complex IEA
 cellular_componentGO:0071339 MLL1 complex IEA


Pathways (from Reactome)
Pathway description
HATs acetylate histones
UCH proteinases


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0009019 neuronal stem cell neuronal stem cell cell proliferation disrupted , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000036956 asxl1 / additional sex combs like transcriptional regulator 1 / P59598* / Q8IXJ9* / Putative Polycomb group protein ASXL1 * / additional sex combs like 1, transcriptional regulator*  / complex
 ENSDARG00000063051 bap1 / BRCA1 associated protein-1 (ubiquitin carboxy-terminal hydrolase) / Q92560* / Q99PU7* / BRCA1 associated protein 1* / Ubiquitin carboxyl-terminal hydrolase BAP1 *  / complex / reaction
 ENSDARG00000076501 asxl2 / additional sex combs like transcriptional regulator 2 / Q76L83* / putative Polycomb group protein ASXL2 isoform 1 * / additional sex combs like 2, transcriptional regulator*  / complex
 ENSDARG00000030583 foxk2 / forkhead box K2 / Q01167*  / complex
 ENSDARG00000027978 yy1b / YY1 transcription factor b / YY1* / ZFP42* / Q96MM3* / P25490* / Q00899* / zinc finger protein 42* / YY1 transcription factor* / ZFP42 zinc finger protein*  / complex
 ENSDARG00000042796 yy1a / YY1 transcription factor a / YY1* / ZFP42* / Q96MM3* / P25490* / Q00899* / zinc finger protein 42* / YY1 transcription factor* / ZFP42 zinc finger protein*  / complex
 ENSDARG00000011609 si:ch211-262e15.1 / FOXK2* / Q01167* / Q3UCQ1* / forkhead box K2* / Forkhead box protein K2 *  / complex
 ENSDARG00000037872 foxk1 / forkhead box K1 / P42128* / P85037* / Forkhead box protein K1 *  / complex






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr