ENSMUSG00000003680


Mus musculus

Features
Gene ID: ENSMUSG00000003680
  
Biological name :Taf6l
  
Synonyms : Q8R2K4 / Q9CY24 / Taf6l / TATA-box binding protein associated factor 6 like
  
Possible biological names infered from orthology : Q9Y6J9
  
Species: Mus musculus
  
Chr. number: 19
Strand: -1
Band: A
Gene start: 8772522
Gene end: 8786417
  
Corresponding Affymetrix probe sets: 10465783 (MoGene1.0st)   10465790 (MoGene1.0st)   1436963_x_at (Mouse Genome 430 2.0 Array)   1449842_at (Mouse Genome 430 2.0 Array)   1452600_at (Mouse Genome 430 2.0 Array)   1455874_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000135193
Ensembl peptide - ENSMUSP00000135220
Ensembl peptide - ENSMUSP00000010249
Ensembl peptide - ENSMUSP00000003777
Ensembl peptide - ENSMUSP00000135028
Ensembl peptide - ENSMUSP00000140136
Ensembl peptide - ENSMUSP00000135090
NCBI entrez gene - 225895     See in Manteia.
NCBI entrez gene - 67706     See in Manteia.
MGI - MGI:2444957
RefSeq - NM_026325
RefSeq - NM_001177798
RefSeq - NM_146092
RefSeq Peptide - NP_001171269
RefSeq Peptide - NP_666204
RefSeq Peptide - NP_080601
swissprot - Q9CY24
swissprot - A0A087WQC4
swissprot - H3BJR2
swissprot - H3BK01
swissprot - K3W4L1
swissprot - Q8R2K4
Ensembl - ENSMUSG00000003680
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 taf6lENSDARG00000079684Danio rerio
 TAF6LENSG00000162227Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Taf6 / Q62311 / Mus musculus TATA-box binding protein associated factor 6 (Taf6), transcript variant 4, mRNA. / P49848* / TATA-box binding protein associated factor 6*ENSMUSG0000003698020


Protein motifs (from Interpro)
Interpro ID Name
 IPR004823  TATA box binding protein associated factor (TAF)
 IPR009072  Histone-fold
 IPR011442  TAF6, C-terminal HEAT repeat domain
 IPR011989  Armadillo-like helical
 IPR016024  Armadillo-type fold
 IPR029776  Transmembrane protein 179B


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006352 DNA-templated transcription, initiation IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0008150 biological_process ND
 biological_processGO:0043966 histone H3 acetylation ISO
 biological_processGO:0051090 regulation of DNA-binding transcription factor activity IEA
 cellular_componentGO:0000124 SAGA complex IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm ISO
 cellular_componentGO:0005669 transcription factor TFIID complex IEA
 cellular_componentGO:0005730 nucleolus ISO
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0016607 nuclear speck ISO
 cellular_componentGO:0030914 STAGA complex ISO
 cellular_componentGO:0046695 SLIK (SAGA-like) complex IEA
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0003713 transcription coactivator activity ISO
 molecular_functionGO:0004402 histone acetyltransferase activity ISO
 molecular_functionGO:0005488 binding IEA
 molecular_functionGO:0046982 protein heterodimerization activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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