ENSMUSG00000009739


Mus musculus

Features
Gene ID: ENSMUSG00000009739
  
Biological name :Pou6f1
  
Synonyms : Pou6f1 / POU domain, class 6, transcription factor 1 / Q07916
  
Possible biological names infered from orthology : POU class 6 homeobox 1
  
Species: Mus musculus
  
Chr. number: 15
Strand: -1
Band: F1
Gene start: 100575318
Gene end: 100599984
  
Corresponding Affymetrix probe sets: 10432619 (MoGene1.0st)   1420749_a_at (Mouse Genome 430 2.0 Array)   1452844_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000145707
Ensembl peptide - ENSMUSP00000135415
Ensembl peptide - ENSMUSP00000135670
Ensembl peptide - ENSMUSP00000049955
Ensembl peptide - ENSMUSP00000073504
Ensembl peptide - ENSMUSP00000134880
NCBI entrez gene - 19009     See in Manteia.
MGI - MGI:102935
RefSeq - XM_017316509
RefSeq - XM_006520608
RefSeq - XM_006520609
RefSeq - XM_006520611
RefSeq - XM_006520614
RefSeq - XM_011245512
RefSeq - XM_011245513
RefSeq - XM_017316508
RefSeq - NM_001304965
RefSeq - NM_010127
RefSeq Peptide - NP_001291894
RefSeq Peptide - NP_034257
swissprot - A0A0A0MQN7
swissprot - H3BKJ6
swissprot - Q5U4D4
swissprot - Q07916
swissprot - Q6X2R9
Ensembl - ENSMUSG00000009739
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 P31367ENSDARG00000011570Danio rerio
 POU6F1ENSG00000184271Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Pou6f2 / POU domain, class 6, transcription factor 2 / P78424* / POU class 6 homeobox 2*ENSMUSG0000000973440


Protein motifs (from Interpro)
Interpro ID Name
 IPR000327  POU-specific domain
 IPR001356  Homeobox domain
 IPR009057  Homeobox-like domain superfamily
 IPR010982  Lambda repressor-like, DNA-binding domain superfamily
 IPR013847  POU domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II ISO
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0015629 actin cytoskeleton IEA
 cellular_componentGO:0016604 nuclear body IEA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IDA
 molecular_functionGO:0001227 transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding ISO
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA
 molecular_functionGO:0043565 sequence-specific DNA binding ISO


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr