ENSMUSG00000020520


Mus musculus

Features
Gene ID: ENSMUSG00000020520
  
Biological name :Galnt10
  
Synonyms : Galnt10 / Polypeptide N-acetylgalactosaminyltransferase 10 / Q6P9S7
  
Possible biological names infered from orthology : Q86SR1
  
Species: Mus musculus
  
Chr. number: 11
Strand: 1
Band: B1.3
Gene start: 57645442
Gene end: 57787514
  
Corresponding Affymetrix probe sets: 10376269 (MoGene1.0st)   1418194_at (Mouse Genome 430 2.0 Array)   1418195_at (Mouse Genome 430 2.0 Array)   1440493_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000065096
Ensembl peptide - ENSMUSP00000104474
NCBI entrez gene - 171212     See in Manteia.
MGI - MGI:1890480
RefSeq - XM_006532391
RefSeq - NM_134189
RefSeq - XM_006532386
RefSeq - XM_006532389
RefSeq - XM_006532390
RefSeq Peptide - NP_598950
swissprot - Q5SQF9
swissprot - Q5ST18
swissprot - Q6P9S7
Ensembl - ENSMUSG00000020520
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 galnt10ENSDARG00000103825Danio rerio
 GALNT10ENSGALG00000004033Gallus gallus
 Q86SR1ENSG00000164574Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Galntl6 / polypeptide N-acetylgalactosaminyltransferase like 6 / Q49A17*ENSMUSG0000009691470
Galnt7 / Q80VA0 / N-acetylgalactosaminyltransferase 7 / Q86SF2* / polypeptide N-acetylgalactosaminyltransferase 7*ENSMUSG0000003160840
Q9D2N8 / Galnt15 / Polypeptide N-acetylgalactosaminyltransferase 15 / Q8N3T1*ENSMUSG0000002190333
Q7TT15 / Galnt17 / Polypeptide N-acetylgalactosaminyltransferase 17 / Q6IS24*ENSMUSG0000003404032
Q8K1B9 / Galnt18 / Polypeptide N-acetylgalactosaminyltransferase 18 / Q6P9A2*ENSMUSG0000003829629
Galnt9 / polypeptide N-acetylgalactosaminyltransferase 9 / Q9HCQ5*ENSMUSG0000003331628


Protein motifs (from Interpro)
Interpro ID Name
 IPR000772  Ricin B, lectin domain
 IPR001173  Glycosyltransferase 2-like
 IPR029044  Nucleotide-diphospho-sugar transferases
 IPR035992  Ricin B-like lectins


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006486 protein glycosylation IEA
 biological_processGO:0006493 protein O-linked glycosylation IEA
 biological_processGO:0016266 O-glycan processing IEA
 cellular_componentGO:0000139 Golgi membrane IEA
 cellular_componentGO:0005575 cellular_component ND
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0004653 polypeptide N-acetylgalactosaminyltransferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016757 transferase activity, transferring glycosyl groups IEA
 molecular_functionGO:0030246 carbohydrate binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
O-linked glycosylation of mucins


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0002169 no phenotype detected "normal, viable and fertile appearance and behavior; indistinguishable from controls" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Casp9tm1Flv/Casp9tm1Flv
Genetic Background: B6.129S1-Casp9tm1Flv

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr