ENSMUSG00000028099


Mus musculus

Features
Gene ID: ENSMUSG00000028099
  
Biological name :Polr3c
  
Synonyms : Polr3c / polymerase (RNA) III (DNA directed) polypeptide C / Q9D483
  
Possible biological names infered from orthology : Q9BUI4 / RNA polymerase III subunit C
  
Species: Mus musculus
  
Chr. number: 3
Strand: -1
Band: F2.1
Gene start: 96711490
Gene end: 96727628
  
Corresponding Affymetrix probe sets: 10500388 (MoGene1.0st)   1451658_a_at (Mouse Genome 430 2.0 Array)   1453256_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000119236
Ensembl peptide - ENSMUSP00000123513
Ensembl peptide - ENSMUSP00000122435
Ensembl peptide - ENSMUSP00000029741
Ensembl peptide - ENSMUSP00000115300
NCBI entrez gene - 74414     See in Manteia.
MGI - MGI:1921664
RefSeq - XM_006502188
RefSeq - NM_028925
RefSeq - XM_006502187
RefSeq Peptide - NP_083201
swissprot - D3YYS2
swissprot - Q9D483
swissprot - F6QK97
swissprot - B2RX77
Ensembl - ENSMUSG00000028099
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 polr3cENSDARG00000057562Danio rerio
 POLR3CENSG00000186141Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR008806  RNA polymerase III Rpc82, C -terminal
 IPR013197  RNA polymerase III subunit RPC82-related, helix-turn-helix
 IPR036388  Winged helix-like DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002376 immune system process IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006383 transcription by RNA polymerase III IEA
 biological_processGO:0032728 positive regulation of interferon-beta production ISS
 biological_processGO:0045087 innate immune response IEA
 biological_processGO:0045089 positive regulation of innate immune response ISS
 biological_processGO:0051607 defense response to virus IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm ISO
 cellular_componentGO:0005666 DNA-directed RNA polymerase III complex IBA
 molecular_functionGO:0001056 RNA polymerase III activity IBA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003697 single-stranded DNA binding ISS
 molecular_functionGO:0003899 DNA-directed 5"-3" RNA polymerase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016779 nucleotidyltransferase activity IEA


Pathways (from Reactome)
Pathway description
RNA Polymerase III Transcription Initiation From Type 1 Promoter
RNA Polymerase III Transcription Initiation From Type 2 Promoter
RNA Polymerase III Transcription Initiation From Type 3 Promoter


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000027427 Polr3f / Q921X6 / polymerase (RNA) III (DNA directed) polypeptide F / Q9H1D9* / RNA polymerase III subunit F*  / complex
 ENSMUSG00000035834 Polr3g / Q6NXY9 / DNA-directed RNA polymerase III subunit RPC7 / O15318* / RNA polymerase III subunit G*  / complex
 ENSMUSG00000028104 Q8R0C0 / Polr3gl / DNA-directed RNA polymerase III subunit RPC7-like / Q9BT43* / AC243547.3* / RNA polymerase III subunit G like*  / complex






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr