ENSMUSG00000028478


Mus musculus

Features
Gene ID: ENSMUSG00000028478
  
Biological name :Clta
  
Synonyms : clathrin light chain A / Clta
  
Possible biological names infered from orthology : P09496
  
Species: Mus musculus
  
Chr. number: 4
Strand: 1
Band: B1
Gene start: 44004452
Gene end: 44032846
  
Corresponding Affymetrix probe sets: 10504458 (MoGene1.0st)   1421062_s_at (Mouse Genome 430 2.0 Array)   1434540_a_at (Mouse Genome 430 2.0 Array)   1444328_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000103479
Ensembl peptide - ENSMUSP00000103478
Ensembl peptide - ENSMUSP00000103481
Ensembl peptide - ENSMUSP00000127344
Ensembl peptide - ENSMUSP00000103483
Ensembl peptide - ENSMUSP00000103477
NCBI entrez gene - 12757     See in Manteia.
MGI - MGI:894297
RefSeq - XM_006537590
RefSeq - NM_001080384
RefSeq - NM_001080385
RefSeq - NM_001080386
RefSeq - NM_001290470
RefSeq - NM_016760
RefSeq - XM_006537587
RefSeq - XM_006537588
RefSeq Peptide - NP_001073853
RefSeq Peptide - NP_001073855
RefSeq Peptide - NP_001277399
RefSeq Peptide - NP_058040
RefSeq Peptide - NP_001073854
swissprot - Q6PFA2
swissprot - B1AWE1
swissprot - B1AWE0
swissprot - B1AWD9
swissprot - B1AWD8
Ensembl - ENSMUSG00000028478
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cltaENSDARG00000045618Danio rerio
 CLTAENSGALG00000015326Gallus gallus
 CLTAENSG00000122705Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Cltb / Q6IRU5 / Clathrin light chain B / P09497*ENSMUSG0000004754753


Protein motifs (from Interpro)
Interpro ID Name
 IPR000996  Clathrin light chain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IEA
 biological_processGO:0006897 endocytosis IEA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0048268 clathrin coat assembly IEA
 cellular_componentGO:0005905 clathrin-coated pit IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030118 clathrin coat IEA
 cellular_componentGO:0030130 clathrin coat of trans-Golgi network vesicle IEA
 cellular_componentGO:0030132 clathrin coat of coated pit IEA
 cellular_componentGO:0030136 clathrin-coated vesicle IEA
 cellular_componentGO:0030659 cytoplasmic vesicle membrane IEA
 cellular_componentGO:0030672 synaptic vesicle membrane IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0071439 clathrin complex IEA
 molecular_functionGO:0005198 structural molecule activity IEA
 molecular_functionGO:0032050 clathrin heavy chain binding IEA
 molecular_functionGO:0042277 peptide binding IEA
 molecular_functionGO:0051020 GTPase binding IEA


Pathways (from Reactome)
Pathway description
Retrograde neurotrophin signalling
Gap junction degradation
Formation of annular gap junctions
MHC class II antigen presentation
Lysosome Vesicle Biogenesis
Golgi Associated Vesicle Biogenesis
Recycling pathway of L1
WNT5A-dependent internalization of FZD4
WNT5A-dependent internalization of FZD2, FZD5 and ROR2
Cargo recognition for clathrin-mediated endocytosis
Clathrin-mediated endocytosis
VLDLR internalisation and degradation
LDL clearance


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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