ENSMUSG00000028584


Mus musculus

Features
Gene ID: ENSMUSG00000028584
  
Biological name :Lrrc38
  
Synonyms : A2VDH3 / Leucine-rich repeat-containing protein 38 / Lrrc38
  
Possible biological names infered from orthology : leucine rich repeat containing 38 / Q5VT99
  
Species: Mus musculus
  
Chr. number: 4
Strand: 1
Band: E1
Gene start: 143349757
Gene end: 143371032
  
Corresponding Affymetrix probe sets: 10510053 (MoGene1.0st)   1439491_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000053597
NCBI entrez gene - 242735     See in Manteia.
MGI - MGI:2442845
RefSeq - NM_001162983
RefSeq Peptide - NP_001156455
swissprot - A2VDH3
Ensembl - ENSMUSG00000028584
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lrrc38aENSDARG00000075147Danio rerio
 lrrc38bENSDARG00000087745Danio rerio
 LRRC38ENSGALG00000004097Gallus gallus
 LRRC38ENSG00000162494Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Lrrc55 / Q3UY51 / Leucine-rich repeat-containing protein 55 / Q6ZSA7* / leucine rich repeat containing 55*ENSMUSG0000007522435
Lrrc26 / Q91W20 / Leucine-rich repeat-containing protein 26 / Q2I0M4* / leucine rich repeat containing 26*ENSMUSG0000002696131
Lrrc24 / Q8BHA1 / Leucine-rich repeat-containing protein 24 / Q50LG9* / leucine rich repeat containing 24*ENSMUSG0000003370731
Lrrc52 / Q5M8M9 / Leucine-rich repeat-containing protein 52 / Q8N7C0* / leucine rich repeat containing 52*ENSMUSG0000004048529
Q7M6Z0 / Rtn4rl2 / Reticulon-4 receptor-like 2 / Q86UN3*ENSMUSG0000005089627
Rtn4r / Q99PI8 / Reticulon-4 receptor / Q9BZR6*ENSMUSG0000004381125
Q8K0S5 / Rtn4rl1 / Reticulon-4 receptor-like 1 / Q86UN2*ENSMUSG0000004528724
Lrtm2 / Q8BGX3 / Leucine-rich repeat and transmembrane domain-containing protein 2 / Q8N967* / leucine rich repeats and transmembrane domains 2*ENSMUSG0000005500324
Lrtm1 / Q8BXQ3 / Leucine-rich repeat and transmembrane domain-containing protein 1 / Q9HBL6* / leucine rich repeats and transmembrane domains 1*ENSMUSG0000004577624


Protein motifs (from Interpro)
Interpro ID Name
 IPR000372  Leucine-rich repeat N-terminal domain
 IPR000483  Cysteine-rich flanking region, C-terminal
 IPR001611  Leucine-rich repeat
 IPR003591  Leucine-rich repeat, typical subtype
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0007409 axonogenesis IBA
 biological_processGO:0071805 potassium ion transmembrane transport IEA
 biological_processGO:1903818 positive regulation of voltage-gated potassium channel activity IEA
 cellular_componentGO:0005615 extracellular space IBA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0008076 voltage-gated potassium channel complex IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005249 voltage-gated potassium channel activity IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0044325 ion channel binding IEA
 molecular_functionGO:0099104 potassium channel activator activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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