ENSDARG00000075147


Danio rerio

Features
Gene ID: ENSDARG00000075147
  
Biological name :lrrc38a
  
Synonyms : leucine rich repeat containing 38a / lrrc38a
  
Possible biological names infered from orthology : A2VDH3 / leucine rich repeat containing 38 / Leucine-rich repeat-containing protein 38 / LRRC38 / Q5VT99
  
Species: Danio rerio
  
Chr. number: 23
Strand: -1
Band:
Gene start: 21775436
Gene end: 21797517
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000103681
NCBI entrez gene - 567935     See in Manteia.
swissprot - F1Q7W4
ZFIN ID - ZDB-GENE-080327-12
Ensembl - ENSDARG00000075147
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LRRC38ENSGALG00000004097Gallus gallus
 LRRC38ENSG00000162494Homo sapiens
 A2VDH3ENSMUSG00000028584Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lrrc38b / leucine rich repeat containing 38b / A2VDH3* / LRRC38* / Q5VT99* / leucine rich repeat containing 38* / Leucine-rich repeat-containing protein 38 *ENSDARG0000008774579
CABZ01112864.1 / LRRC52* / Q8N7C0* / leucine rich repeat containing 52*ENSDARG0000009993732
LRRC52 / si:dkey-52j6.3 / Q5M8M9* / Q8N7C0* / leucine rich repeat containing 52* / Leucine-rich repeat-containing protein 52 *ENSDARG0000009069832
lrrc24 / leucine rich repeat containing 24 / Q50LG9* / Q8BHA1* / Leucine-rich repeat-containing protein 24 *ENSDARG0000010170429
lrtm2b / leucine-rich repeats and transmembrane domains 2b / LRTM2* / Q8BGX3* / Q8N967* / leucine rich repeats and transmembrane domains 2* / Leucine-rich repeat and transmembrane domain-co...ENSDARG0000004581128
rtn4r / reticulon 4 receptor / Q99PI8* / Q9BZR6*ENSDARG0000009003526
rtn4rl1b / reticulon 4 receptor-like 1b / Q86UN2* / RTN4RL1* / reticulon 4 receptor like 1*ENSDARG0000009852826
rtn4rl1a / reticulon 4 receptor-like 1a / Q86UN2* / Q8K0S5* / RTN4RL1* / reticulon 4 receptor like 1*ENSDARG0000000785626
rtn4rl2b / reticulon 4 receptor-like 2b / Q7M6Z0* / Q86UN3* / RTN4RL2* / reticulon 4 receptor like 2*ENSDARG0000003749525
lrtm1 / leucine rich repeats and transmembrane domains 1 / Q9HBL6*ENSDARG0000009874224
rtn4rl2a / reticulon 4 receptor-like 2 a / Q7M6Z0* / Q86UN3* / RTN4RL2* / reticulon 4 receptor like 2*ENSDARG0000005201224
si:ch211-237i5.4ENSDARG0000008883324
lrtm2a / leucine-rich repeats and transmembrane domains 2a / LRTM2* / Q8BGX3* / Q8N967* / leucine rich repeats and transmembrane domains 2* / Leucine-rich repeat and transmembrane domain-co...ENSDARG0000004548324


Protein motifs (from Interpro)
Interpro ID Name
 IPR000372  Leucine-rich repeat N-terminal domain
 IPR000483  Cysteine-rich flanking region, C-terminal
 IPR001611  Leucine-rich repeat
 IPR003591  Leucine-rich repeat, typical subtype
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007409 axonogenesis IBA
 cellular_componentGO:0005615 extracellular space IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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