ENSDARG00000045483


Danio rerio

Features
Gene ID: ENSDARG00000045483
  
Biological name :lrtm2a
  
Synonyms : leucine-rich repeats and transmembrane domains 2a / lrtm2a
  
Possible biological names infered from orthology : Leucine-rich repeat and transmembrane domain-containing protein 2 / leucine rich repeats and transmembrane domains 2 / LRTM2 / Q8BGX3 / Q8N967
  
Species: Danio rerio
  
Chr. number: 4
Strand: 1
Band:
Gene start: 20255160
Gene end: 20265726
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000116703
Ensembl peptide - ENSDARP00000157527
NCBI entrez gene - 557289     See in Manteia.
swissprot - F1R0V0
ZFIN ID - ZDB-GENE-041210-218
Ensembl - ENSDARG00000045483
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LRTM2ENSGALG00000026214Gallus gallus
 LRTM2ENSG00000166159Homo sapiens
 Lrtm2ENSMUSG00000055003Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lrtm2b / leucine-rich repeats and transmembrane domains 2b / LRTM2* / Q8BGX3* / Q8N967* / leucine rich repeats and transmembrane domains 2* / Leucine-rich repeat and transmembrane domain-co...ENSDARG0000004581140
lrtm1 / leucine rich repeats and transmembrane domains 1 / Q9HBL6*ENSDARG0000009874236
LRRC52 / si:dkey-52j6.3 / Q5M8M9* / Q8N7C0* / leucine rich repeat containing 52* / Leucine-rich repeat-containing protein 52 *ENSDARG0000009069821
si:ch211-237i5.4ENSDARG0000008883321
lrrc24 / leucine rich repeat containing 24 / Q50LG9* / Q8BHA1* / Leucine-rich repeat-containing protein 24 *ENSDARG0000010170420
rtn4r / reticulon 4 receptor / Q99PI8* / Q9BZR6*ENSDARG0000009003520
rtn4rl1b / reticulon 4 receptor-like 1b / Q86UN2* / RTN4RL1* / reticulon 4 receptor like 1*ENSDARG0000009852820
lrrc38b / leucine rich repeat containing 38b / A2VDH3* / LRRC38* / Q5VT99* / leucine rich repeat containing 38* / Leucine-rich repeat-containing protein 38 *ENSDARG0000008774520
rtn4rl2b / reticulon 4 receptor-like 2b / Q7M6Z0* / Q86UN3* / RTN4RL2* / reticulon 4 receptor like 2*ENSDARG0000003749519
lrrc38a / leucine rich repeat containing 38a / A2VDH3* / LRRC38* / Q5VT99* / leucine rich repeat containing 38* / Leucine-rich repeat-containing protein 38 *ENSDARG0000007514719
rtn4rl2a / reticulon 4 receptor-like 2 a / Q7M6Z0* / Q86UN3* / RTN4RL2* / reticulon 4 receptor like 2*ENSDARG0000005201218
CABZ01112864.1 / LRRC52* / Q8N7C0* / leucine rich repeat containing 52*ENSDARG0000009993718
rtn4rl1a / reticulon 4 receptor-like 1a / Q86UN2* / Q8K0S5* / RTN4RL1* / reticulon 4 receptor like 1*ENSDARG0000000785618


Protein motifs (from Interpro)
Interpro ID Name
 IPR000483  Cysteine-rich flanking region, C-terminal
 IPR001611  Leucine-rich repeat
 IPR003591  Leucine-rich repeat, typical subtype
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007409 axonogenesis IBA
 cellular_componentGO:0005615 extracellular space IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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