ENSDARG00000052012


Danio rerio

Features
Gene ID: ENSDARG00000052012
  
Biological name :rtn4rl2a
  
Synonyms : reticulon 4 receptor-like 2 a / rtn4rl2a
  
Possible biological names infered from orthology : Q7M6Z0 / Q86UN3 / reticulon 4 receptor like 2 / RTN4RL2
  
Species: Danio rerio
  
Chr. number: 1
Strand: 1
Band:
Gene start: 44491077
Gene end: 44495902
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000147905
Ensembl peptide - ENSDARP00000068226
NCBI entrez gene - 403307     See in Manteia.
RefSeq - NM_203479
RefSeq Peptide - NP_982346
swissprot - A8BBJ2
ZFIN ID - ZDB-GENE-040310-4
Ensembl - ENSDARG00000052012
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RTN4RL2ENSGALG00000032903Gallus gallus
 Q86UN3ENSG00000186907Homo sapiens
 Q7M6Z0ENSMUSG00000050896Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rtn4rl2b / reticulon 4 receptor-like 2b / Q7M6Z0* / Q86UN3* / RTN4RL2* / reticulon 4 receptor like 2*ENSDARG0000003749572
rtn4rl1b / reticulon 4 receptor-like 1b / Q86UN2* / RTN4RL1* / reticulon 4 receptor like 1*ENSDARG0000009852837
rtn4r / reticulon 4 receptor / Q99PI8* / Q9BZR6*ENSDARG0000009003536
rtn4rl1a / reticulon 4 receptor-like 1a / Q86UN2* / Q8K0S5* / RTN4RL1* / reticulon 4 receptor like 1*ENSDARG0000000785635
lrrc24 / leucine rich repeat containing 24 / Q50LG9* / Q8BHA1* / Leucine-rich repeat-containing protein 24 *ENSDARG0000010170420
si:ch211-237i5.4ENSDARG0000008883318
lrrc38b / leucine rich repeat containing 38b / A2VDH3* / LRRC38* / Q5VT99* / leucine rich repeat containing 38* / Leucine-rich repeat-containing protein 38 *ENSDARG0000008774516
lrrc38a / leucine rich repeat containing 38a / A2VDH3* / LRRC38* / Q5VT99* / leucine rich repeat containing 38* / Leucine-rich repeat-containing protein 38 *ENSDARG0000007514715
lrtm2a / leucine-rich repeats and transmembrane domains 2a / LRTM2* / Q8BGX3* / Q8N967* / leucine rich repeats and transmembrane domains 2* / Leucine-rich repeat and transmembrane domain-co...ENSDARG0000004548314
LRRC52 / si:dkey-52j6.3 / Q5M8M9* / Q8N7C0* / leucine rich repeat containing 52* / Leucine-rich repeat-containing protein 52 *ENSDARG0000009069814
lrtm1 / leucine rich repeats and transmembrane domains 1 / Q9HBL6*ENSDARG0000009874214
CABZ01112864.1 / LRRC52* / Q8N7C0* / leucine rich repeat containing 52*ENSDARG0000009993714
lrtm2b / leucine-rich repeats and transmembrane domains 2b / LRTM2* / Q8BGX3* / Q8N967* / leucine rich repeats and transmembrane domains 2* / Leucine-rich repeat and transmembrane domain-co...ENSDARG0000004581113


Protein motifs (from Interpro)
Interpro ID Name
 IPR000483  Cysteine-rich flanking region, C-terminal
 IPR001611  Leucine-rich repeat
 IPR003591  Leucine-rich repeat, typical subtype
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006469 negative regulation of protein kinase activity IBA
 biological_processGO:0019221 cytokine-mediated signaling pathway IBA
 biological_processGO:0046426 negative regulation of JAK-STAT cascade IBA
 biological_processGO:0048916 posterior lateral line development IGI
 biological_processGO:0048922 posterior lateral line neuromast deposition IGI
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0004860 protein kinase inhibitor activity IBA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000940 posterior lateral line neuromast posterior lateral line neuromast decreased amount , abnormal
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 ZFA:0001157 posterior lateral line primordium posterior lateral line primordium decreased size , abnormal
posterior lateral line primordium disorganized , abnormal
posterior lateral line primordium lacks parts or has fewer parts of type protoneuromast , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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