ENSDARG00000098742


Danio rerio

Features
Gene ID: ENSDARG00000098742
  
Biological name :lrtm1
  
Synonyms : leucine rich repeats and transmembrane domains 1 / lrtm1
  
Possible biological names infered from orthology : Leucine-rich repeat and transmembrane domain-containing protein 1 / Q8BXQ3 / Q9HBL6
  
Species: Danio rerio
  
Chr. number: 8
Strand: -1
Band:
Gene start: 53639625
Gene end: 53649294
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000132529
NCBI entrez gene - 101883439     See in Manteia.
RefSeq - NM_001327807
RefSeq Peptide - NP_001314736
swissprot - E7F6K4
ZFIN ID - ZDB-GENE-161221-2
Ensembl - ENSDARG00000098742
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LRTM1ENSGALG00000005404Gallus gallus
 LRTM1ENSG00000144771Homo sapiens
 Lrtm1ENSMUSG00000045776Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
lrtm2a / leucine-rich repeats and transmembrane domains 2a / LRTM2* / Q8BGX3* / Q8N967* / leucine rich repeats and transmembrane domains 2* / Leucine-rich repeat and transmembrane domain-co...ENSDARG0000004548337
lrtm2b / leucine-rich repeats and transmembrane domains 2b / LRTM2* / Q8BGX3* / Q8N967* / leucine rich repeats and transmembrane domains 2* / Leucine-rich repeat and transmembrane domain-co...ENSDARG0000004581131
LRRC52 / si:dkey-52j6.3 / Q5M8M9* / Q8N7C0* / leucine rich repeat containing 52* / Leucine-rich repeat-containing protein 52 *ENSDARG0000009069821
lrrc24 / leucine rich repeat containing 24 / Q50LG9* / Q8BHA1* / Leucine-rich repeat-containing protein 24 *ENSDARG0000010170421
rtn4r / reticulon 4 receptor / Q99PI8* / Q9BZR6*ENSDARG0000009003521
si:ch211-237i5.4ENSDARG0000008883320
rtn4rl1b / reticulon 4 receptor-like 1b / Q86UN2* / RTN4RL1* / reticulon 4 receptor like 1*ENSDARG0000009852820
rtn4rl2b / reticulon 4 receptor-like 2b / Q7M6Z0* / Q86UN3* / RTN4RL2* / reticulon 4 receptor like 2*ENSDARG0000003749520
lrrc38a / leucine rich repeat containing 38a / A2VDH3* / LRRC38* / Q5VT99* / leucine rich repeat containing 38* / Leucine-rich repeat-containing protein 38 *ENSDARG0000007514720
lrrc38b / leucine rich repeat containing 38b / A2VDH3* / LRRC38* / Q5VT99* / leucine rich repeat containing 38* / Leucine-rich repeat-containing protein 38 *ENSDARG0000008774520
CABZ01112864.1 / LRRC52* / Q8N7C0* / leucine rich repeat containing 52*ENSDARG0000009993719
rtn4rl1a / reticulon 4 receptor-like 1a / Q86UN2* / Q8K0S5* / RTN4RL1* / reticulon 4 receptor like 1*ENSDARG0000000785618
rtn4rl2a / reticulon 4 receptor-like 2 a / Q7M6Z0* / Q86UN3* / RTN4RL2* / reticulon 4 receptor like 2*ENSDARG0000005201218


Protein motifs (from Interpro)
Interpro ID Name
 IPR000372  Leucine-rich repeat N-terminal domain
 IPR000483  Cysteine-rich flanking region, C-terminal
 IPR001611  Leucine-rich repeat
 IPR003591  Leucine-rich repeat, typical subtype
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006469 negative regulation of protein kinase activity IBA
 biological_processGO:0019221 cytokine-mediated signaling pathway IBA
 biological_processGO:0046426 negative regulation of JAK-STAT cascade IBA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0004860 protein kinase inhibitor activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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