ENSMUSG00000028949


Mus musculus

Features
Gene ID: ENSMUSG00000028949
  
Biological name :Smarcd3
  
Synonyms : Q6P9Z1 / Smarcd3 / SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3
  
Possible biological names infered from orthology : Q6STE5
  
Species: Mus musculus
  
Chr. number: 5
Strand: -1
Band: A3
Gene start: 24590818
Gene end: 24624411
  
Corresponding Affymetrix probe sets: 10528664 (MoGene1.0st)   1418467_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000030791
Ensembl peptide - ENSMUSP00000143437
NCBI entrez gene - 66993     See in Manteia.
MGI - MGI:1914243
RefSeq - XM_017321074
RefSeq - NM_025891
RefSeq - XM_006535797
RefSeq - XM_006535798
RefSeq - XM_006535799
RefSeq - XM_006535796
RefSeq Peptide - NP_080167
swissprot - Q6P9Z1
swissprot - A0A0G2JG60
Ensembl - ENSMUSG00000028949
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 smarcd3aENSDARG00000038786Danio rerio
 smarcd3bENSDARG00000019969Danio rerio
 SMARCD3ENSGALG00000043137Gallus gallus
 Q6STE5ENSG00000082014Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q61466 / Smarcd1 / SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 / Q96GM5*ENSMUSG0000002301872
Q99JR8 / Smarcd2 / SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 2 / Q92925*ENSMUSG0000007861968


Protein motifs (from Interpro)
Interpro ID Name
 IPR003121  SWIB/MDM2 domain
 IPR019835  SWIB domain
 IPR036885  SWIB/MDM2 domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002052 positive regulation of neuroblast proliferation IEA
 biological_processGO:0003007 heart morphogenesis IMP
 biological_processGO:0003139 secondary heart field specification IMP
 biological_processGO:0003219 cardiac right ventricle formation IMP
 biological_processGO:0003407 neural retina development IEA
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006337 nucleosome disassembly IEA
 biological_processGO:0006338 chromatin remodeling IEA
 biological_processGO:0006351 transcription, DNA-templated ISO
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II ISO
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0010971 positive regulation of G2/M transition of mitotic cell cycle IEA
 biological_processGO:0042692 muscle cell differentiation IMP
 biological_processGO:0043393 regulation of protein binding IDA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0051152 positive regulation of smooth muscle cell differentiation IEA
 cellular_componentGO:0000790 nuclear chromatin IEA
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005737 cytoplasm ISO
 cellular_componentGO:0016514 SWI/SNF complex IEA
 cellular_componentGO:0071564 npBAF complex IEA
 cellular_componentGO:0071565 nBAF complex IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0005102 signaling receptor binding IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0008134 transcription factor binding IEA
 molecular_functionGO:0016922 nuclear receptor binding ISO
 molecular_functionGO:0030374 nuclear receptor transcription coactivator activity ISO
 molecular_functionGO:0035257 nuclear hormone receptor binding IEA


Pathways (from Reactome)
Pathway description
RMTs methylate histone arginines
Regulation of lipid metabolism by Peroxisome proliferator-activated receptor alpha (PPARalpha)
RUNX1 interacts with co-factors whose precise effect on RUNX1 targets is not known


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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