ENSMUSG00000031167


Mus musculus

Features
Gene ID: ENSMUSG00000031167
  
Biological name :Rbm3
  
Synonyms : O89086 / Rbm3 / RNA binding motif (RNP1, RRM) protein 3
  
Possible biological names infered from orthology : P98179 / RNA binding motif protein 3
  
Species: Mus musculus
  
Chr. number: X
Strand: -1
Band: A1.1
Gene start: 8138975
Gene end: 8145880
  
Corresponding Affymetrix probe sets: 10358454 (MoGene1.0st)   10556113 (MoGene1.0st)   10603469 (MoGene1.0st)   1422660_at (Mouse Genome 430 2.0 Array)   1429169_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000038964
Ensembl peptide - ENSMUSP00000111277
Ensembl peptide - ENSMUSP00000138456
Ensembl peptide - ENSMUSP00000138705
Ensembl peptide - ENSMUSP00000111279
Ensembl peptide - ENSMUSP00000111280
Ensembl peptide - ENSMUSP00000111282
Ensembl peptide - ENSMUSP00000111284
NCBI entrez gene - 19652     See in Manteia.
MGI - MGI:1099460
RefSeq - NM_001166411
RefSeq - NM_001166409
RefSeq - NM_001166410
RefSeq - NM_001293658
RefSeq - NM_016809
RefSeq Peptide - NP_001159881
RefSeq Peptide - NP_001159882
RefSeq Peptide - NP_001159883
RefSeq Peptide - NP_001280587
RefSeq Peptide - NP_058089
swissprot - O89086
swissprot - Q545K5
swissprot - Q8BG13
swissprot - S4R2M6
Ensembl - ENSMUSG00000031167
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RBM3ENSG00000102317Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Cirbp / P60824 / Cold-inducible RNA-binding protein / Q14011*ENSMUSG0000004519362
Rbmx / Q9WV02 / RNA binding motif protein, X chromosome / P38159* / RNA binding motif protein, X-linked*ENSMUSG0000003113453
Rbmxl2 / Q8N7X1* / O75526* / RBMXL3* / RNA binding motif protein, X-linked like 2* / RNA binding motif protein, X-linked like 3*ENSMUSG0000007389453
Gm7324 / predicted gene 7324 / Q96E39* / RBMXL1* / RNA binding motif protein, X-linked like 1*ENSMUSG0000004923551
Q91VM5 / Rbmxl1 / RNA binding motif protein, X-linked-like-1 / Q96E39*ENSMUSG0000003707051
Gm21693 / P0C7P1* / P0DJD3* / Q15415* / A6NDE4* / A6NEQ0* / RBMY1B* / RBMY1D* / RBMY1E* / RBMY1F* / RBMY1J* / RBMY1A1* / RNA binding motif protein, Y-linked, family 1, member B* / RNA bindi...ENSMUSG0000009451138
O35698 / Rbmy1a1 / RNA-binding motif protein, Y chromosome, family 1 member A1 / Q15415* / RBMY1B* / RBMY1D* / RBMY1E* / RBMY1F* / RBMY1J* / A6NDE4* / A6NEQ0* / P0C7P1* / P0DJD3* / RNA bin...ENSMUSG0000009465838
Gm4064 / P0C7P1* / P0DJD3* / Q15415* / A6NDE4* / A6NEQ0* / RBMY1B* / RBMY1D* / RBMY1E* / RBMY1F* / RBMY1J* / RBMY1A1* / RNA binding motif protein, Y-linked, family 1, member B* / RNA bindin...ENSMUSG0000010205338
Q60990 / Gm3376 / RNA-binding motif protein, Y chromosome, family 1 member B / Q15415* / RBMY1B* / RBMY1D* / RBMY1E* / RBMY1F* / RBMY1J* / A6NDE4* / A6NEQ0* / P0C7P1* / P0DJD3* / RBMY1A1* ...ENSMUSG0000009652038
O35698 / Gm21704 / predicted gene, 21704 / Q15415* / A6NDE4* / A6NEQ0* / P0C7P1* / P0DJD3* / RBMY1B* / RBMY1D* / RBMY1E* / RBMY1F* / RBMY1J* / RBMY1A1* / RNA binding motif protein, Y-linked...ENSMUSG0000009398738
O35698 / Gm21708 / predicted gene, 21708 / Q15415* / A6NDE4* / A6NEQ0* / P0C7P1* / P0DJD3* / RBMY1B* / RBMY1D* / RBMY1E* / RBMY1F* / RBMY1J* / RBMY1A1* / RNA binding motif protein, Y-linked...ENSMUSG0000009594838
Gm10352 / P0C7P1* / P0DJD3* / Q15415* / A6NDE4* / A6NEQ0* / RBMY1B* / RBMY1D* / RBMY1E* / RBMY1F* / RBMY1J* / RBMY1A1* / RNA binding motif protein, Y-linked, family 1, member B* / RNA bindi...ENSMUSG0000009198738
O35698 / Gm21677 / predicted gene, 21677 / Q15415* / A6NDE4* / A6NEQ0* / P0C7P1* / P0DJD3* / RBMY1B* / RBMY1D* / RBMY1E* / RBMY1F* / RBMY1J* / RBMY1A1* / RNA binding motif protein, Y-linked...ENSMUSG0000009391838
Gm10256 / P0C7P1* / P0DJD3* / Q15415* / A6NDE4* / A6NEQ0* / RBMY1B* / RBMY1D* / RBMY1E* / RBMY1F* / RBMY1J* / RBMY1A1* / RNA binding motif protein, Y-linked, family 1, member B* / RNA bindi...ENSMUSG0000009585238
Tra2b / P62996 / Mus musculus transformer 2 beta (Tra2b), transcript variant 2, mRNA. / P62995* / transformer 2 beta homolog*ENSMUSG0000002285835
Tra2a / transformer 2 alpha / Q13595* / transformer 2 alpha homolog*ENSMUSG0000002981733
Gm29289 / P0C7P1* / P0DJD3* / Q15415* / A6NDE4* / A6NEQ0* / RBMY1B* / RBMY1D* / RBMY1E* / RBMY1F* / RBMY1J* / RBMY1A1* / RNA binding motif protein, Y-linked, family 1, member B* / RNA bindi...ENSMUSG0000010166725


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034278  RBM3/CIRBP, RNA recognition motif
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006412 translation IDA
 biological_processGO:0006417 regulation of translation IDA
 biological_processGO:0009409 response to cold IDA
 biological_processGO:0035196 production of miRNAs involved in gene silencing by miRNA IDA
 biological_processGO:0045727 positive regulation of translation ISS
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0005654 nucleoplasm ISO
 cellular_componentGO:0005730 nucleolus ISO
 cellular_componentGO:0005737 cytoplasm ISS
 cellular_componentGO:0015934 large ribosomal subunit ISS
 cellular_componentGO:0030425 dendrite ISS
 cellular_componentGO:0042995 cell projection IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0043023 ribosomal large subunit binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0002084 abnormal developmental patterning "abnormal systematic arrangement of the developing body along an axis" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Fbxw4Dac/Fbxw4+,mdac/mdac
Genetic Background: involves: SM/Ckc * BALB/cByJ

 MP:0003077 abnormal cell cycle "failure to progress or abnormal progression through the stages of of the cell cycle" [smb:Susan M. Bello, Mouse Genome Informatics Curator, J:91266]
Show

Allelic Composition: Tgfbr1R244Q/Tgfbr1+
Genetic Background: either: (involves: C57BL/6) or (involves: BALB/c * C57BL/6)

 MP:0004924 abnormal behavior "anomalies in the actions, reactions, or performance of an organism in response to external or internal stimuli compared to controls" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Ptpn12tm1b(NCOM)Mfgc/Ptpn12tm1b(NCOM)Mfgc
Genetic Background: C57BL/6N-Ptpn12tm1b(NCOM)Mfgc/Tcp

 MP:0006386 absent somites "missing all somites" [MGI:rbabiuk "Randall Babiuk, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Fbxw4Dac/Fbxw4+,mdac/mdac
Genetic Background: involves: SM/Ckc * BALB/cByJ

 MP:0011704 decreased fibroblast proliferation "reduction in the expansion rate of a fibroblast cell population by cell division" [MGI:csmith]
Show

Allelic Composition: Tgfbr1R244Q/Tgfbr1+
Genetic Background: either: (involves: C57BL/6) or (involves: BALB/c * C57BL/6)

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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