ENSMUSG00000031134


Mus musculus

Features
Gene ID: ENSMUSG00000031134
  
Biological name :Rbmx
  
Synonyms : Q9WV02 / Rbmx / RNA binding motif protein, X chromosome
  
Possible biological names infered from orthology : P38159 / RNA binding motif protein, X-linked
  
Species: Mus musculus
  
Chr. number: X
Strand: -1
Band: A6
Gene start: 57383530
Gene end: 57393036
  
Corresponding Affymetrix probe sets: 10604735 (MoGene1.0st)   1416354_at (Mouse Genome 430 2.0 Array)   1416355_at (Mouse Genome 430 2.0 Array)   1426863_at (Mouse Genome 430 2.0 Array)   1437847_x_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000118121
Ensembl peptide - ENSMUSP00000138198
Ensembl peptide - ENSMUSP00000125720
Ensembl peptide - ENSMUSP00000096070
Ensembl peptide - ENSMUSP00000110374
Ensembl peptide - ENSMUSP00000110378
NCBI entrez gene - 19655     See in Manteia.
MGI - MGI:1343044
RefSeq - NM_001166623
RefSeq - NM_011252
RefSeq Peptide - NP_001160095
RefSeq Peptide - NP_035382
swissprot - S4R1F6
swissprot - A2AFI3
swissprot - Q9WV02
swissprot - A2AFI4
Ensembl - ENSMUSG00000031134
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rbmxENSDARG00000014244Danio rerio
 RBMXENSGALG00000006457Gallus gallus
 RBMXENSG00000147274Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Gm7324 / predicted gene 7324 / Q96E39* / RBMXL1* / RNA binding motif protein, X-linked like 1*ENSMUSG0000004923596
Q91VM5 / Rbmxl1 / RNA binding motif protein, X-linked-like-1 / Q96E39*ENSMUSG0000003707096
Rbmxl2 / Q8N7X1* / O75526* / RBMXL3* / RNA binding motif protein, X-linked like 2* / RNA binding motif protein, X-linked like 3*ENSMUSG0000007389475
O35698 / Gm21708 / predicted gene, 21708 / Q15415* / A6NDE4* / A6NEQ0* / P0C7P1* / P0DJD3* / RBMY1B* / RBMY1D* / RBMY1E* / RBMY1F* / RBMY1J* / RBMY1A1* / RNA binding motif protein, Y-linked...ENSMUSG0000009594847
O35698 / Rbmy1a1 / RNA-binding motif protein, Y chromosome, family 1 member A1 / Q15415* / RBMY1B* / RBMY1D* / RBMY1E* / RBMY1F* / RBMY1J* / A6NDE4* / A6NEQ0* / P0C7P1* / P0DJD3* / RNA bin...ENSMUSG0000009465847
O35698 / Gm21704 / predicted gene, 21704 / Q15415* / A6NDE4* / A6NEQ0* / P0C7P1* / P0DJD3* / RBMY1B* / RBMY1D* / RBMY1E* / RBMY1F* / RBMY1J* / RBMY1A1* / RNA binding motif protein, Y-linked...ENSMUSG0000009398747
O35698 / Gm21677 / predicted gene, 21677 / Q15415* / A6NDE4* / A6NEQ0* / P0C7P1* / P0DJD3* / RBMY1B* / RBMY1D* / RBMY1E* / RBMY1F* / RBMY1J* / RBMY1A1* / RNA binding motif protein, Y-linked...ENSMUSG0000009391847
Gm10352 / P0C7P1* / P0DJD3* / Q15415* / A6NDE4* / A6NEQ0* / RBMY1B* / RBMY1D* / RBMY1E* / RBMY1F* / RBMY1J* / RBMY1A1* / RNA binding motif protein, Y-linked, family 1, member B* / RNA bindi...ENSMUSG0000009198747
Gm10256 / P0C7P1* / P0DJD3* / Q15415* / A6NDE4* / A6NEQ0* / RBMY1B* / RBMY1D* / RBMY1E* / RBMY1F* / RBMY1J* / RBMY1A1* / RNA binding motif protein, Y-linked, family 1, member B* / RNA bindi...ENSMUSG0000009585247
Gm4064 / P0C7P1* / P0DJD3* / Q15415* / A6NDE4* / A6NEQ0* / RBMY1B* / RBMY1D* / RBMY1E* / RBMY1F* / RBMY1J* / RBMY1A1* / RNA binding motif protein, Y-linked, family 1, member B* / RNA bindin...ENSMUSG0000010205347
Q60990 / Gm3376 / RNA-binding motif protein, Y chromosome, family 1 member B / Q15415* / RBMY1B* / RBMY1D* / RBMY1E* / RBMY1F* / RBMY1J* / A6NDE4* / A6NEQ0* / P0C7P1* / P0DJD3* / RBMY1A1* ...ENSMUSG0000009652047
Gm21693 / P0C7P1* / P0DJD3* / Q15415* / A6NDE4* / A6NEQ0* / RBMY1B* / RBMY1D* / RBMY1E* / RBMY1F* / RBMY1J* / RBMY1A1* / RNA binding motif protein, Y-linked, family 1, member B* / RNA bindi...ENSMUSG0000009451146
Cirbp / P60824 / Cold-inducible RNA-binding protein / Q14011*ENSMUSG0000004519324
Tra2b / P62996 / Mus musculus transformer 2 beta (Tra2b), transcript variant 2, mRNA. / P62995* / transformer 2 beta homolog*ENSMUSG0000002285822
Gm29289 / P0C7P1* / P0DJD3* / Q15415* / A6NDE4* / A6NEQ0* / RBMY1B* / RBMY1D* / RBMY1E* / RBMY1F* / RBMY1J* / RBMY1A1* / RNA binding motif protein, Y-linked, family 1, member B* / RNA bindi...ENSMUSG0000010166721
Rbm3 / O89086 / RNA binding motif (RNP1, RRM) protein 3 / P98179* / RNA binding motif protein 3*ENSMUSG0000003116721
Tra2a / transformer 2 alpha / Q13595* / transformer 2 alpha homolog*ENSMUSG0000002981721


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR003954  RNA recognition motif domain, eukaryote
 IPR012604  RBM1CTR
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000381 regulation of alternative mRNA splicing, via spliceosome IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0006376 mRNA splice site selection IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0006509 membrane protein ectodomain proteolysis IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0051259 protein complex oligomerization IEA
 biological_processGO:0071347 cellular response to interleukin-1 IEA
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005719 nuclear euchromatin IEA
 cellular_componentGO:0044530 supraspliceosomal complex IEA
 cellular_componentGO:0070062 extracellular exosome IEA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IEA
 molecular_functionGO:0001047 core promoter binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003727 single-stranded RNA binding IEA
 molecular_functionGO:0003729 mRNA binding IEA
 molecular_functionGO:0019904 protein domain specific binding IEA
 molecular_functionGO:0042802 identical protein binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0001258 decreased body length "decreased crown to tail distance compared to controls" [cwg:Carroll W. Goldsmith, Mouse Genome Informatics Curator]
Show

Allelic Composition: Psphtm1.1(KOMP)Vlcg/Psphtm1.1(KOMP)Vlcg
Genetic Background: C57BL/6N-Psphtm1.1(KOMP)Vlcg/Ucd

 MP:0002968 increased circulating alkaline phosphatase level "elevated activity of this enzyme, which hydrolyzes orthophosphoric monoesters, found in the blood" [RGD:Rat Genome Database submission, Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8]
Show

Allelic Composition: Psphtm1.1(KOMP)Vlcg/Psphtm1.1(KOMP)Vlcg
Genetic Background: C57BL/6N-Psphtm1.1(KOMP)Vlcg/Ucd

 MP:0003961 decreased lean body mass "less than average fat-free physical bulk or volume of the body including all its components except adipose tissue" [honda:Hiraoki Onda, Mouse GEnome Informatics Curator]
Show

Allelic Composition: Psphtm1.1(KOMP)Vlcg/Psphtm1.1(KOMP)Vlcg
Genetic Background: C57BL/6N-Psphtm1.1(KOMP)Vlcg/Ucd

 MP:0010052 increased grip strength "greater ability to grasp and hold objects, often measured as time spent hanging from an object or wire" [ISBN:0471316393 "Crawley, JN, What s Wrong with my Mouse: Behavioral Phenotyping of Transgenic and Knockout Mice"]
Show

Allelic Composition: Psphtm1.1(KOMP)Vlcg/Psphtm1.1(KOMP)Vlcg
Genetic Background: C57BL/6N-Psphtm1.1(KOMP)Vlcg/Ucd

 MP:0012768 decreased KLRG1-positive NK cell number "decrease in the number of KLRG1 positive NK cells that represent a maturation subset of NK cells and is linked to NK cell proliferation" [MGI:Annie_Speak, PMID:19479342]
Show

Allelic Composition: Psphtm1.1(KOMP)Vlcg/Psphtm1.1(KOMP)Vlcg
Genetic Background: C57BL/6N-Psphtm1.1(KOMP)Vlcg/Ucd

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr