ENSDARG00000014244


Danio rerio

Features
Gene ID: ENSDARG00000014244
  
Biological name :rbmx
  
Synonyms : Q7ZWA3 / rbmx / RNA binding motif protein, X-linked
  
Possible biological names infered from orthology : A6NDE4 / A6NEQ0 / Gm10256 / Gm10352 / Gm21677 / Gm21693 / Gm21704 / Gm21708 / Gm29289 / Gm3376 / Gm4064 / Gm7324 / O35698 / O75526 / P0C7P1 / P0DJD3 / P38159 / predicted gene, 21677 / predicted gene, 21704 / predicted gene, 21708 / predicted gene 7324 / Q15415 / Q60990 / Q8N7X1 / Q91VM5 / Q96E39 / Q9WV02 / RBMXL1 / RBMXL2 / RBMXL3 / RBMY1A1 / RBMY1B / RBMY1D / RBMY1E / RBMY1F / RBMY1J / RNA binding motif protein, X chromosome / RNA binding motif protein, X-linked like 1 / RNA binding motif protein, X-linked like 2 / RNA binding motif protein, X-linked like 3 / RNA-binding motif protein, Y chromosome, family 1 member A1 / RNA-binding motif protein, Y chromosome, family 1 member B / RNA binding motif protein, Y-linked, family 1, member A1 / RNA binding motif protein, Y-linked, family 1, member B / RNA binding motif protein, Y-linked, family 1, member D / RNA binding motif protein, Y-linked, family 1, member E / RNA binding motif protein, Y-linked, family 1, member F / RNA binding motif protein, Y-linked, family 1, member J
  
Species: Danio rerio
  
Chr. number: 14
Strand: -1
Band:
Gene start: 31855592
Gene end: 31862720
  
Corresponding Affymetrix probe sets: Dr.2619.1.S1_at (Zebrafish Array)   Dr.2619.1.S2_at (Zebrafish Array)   NM_212598_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000125065
Ensembl peptide - ENSDARP00000145351
Ensembl peptide - ENSDARP00000142604
Ensembl peptide - ENSDARP00000142485
Ensembl peptide - ENSDARP00000009865
Ensembl peptide - ENSDARP00000111610
NCBI entrez gene - 321860     See in Manteia.
RefSeq - NM_212598
RefSeq - XM_021480966
RefSeq Peptide - NP_997763
swissprot - Q7ZWA3
swissprot - A0A171EBK3
swissprot - A0A140LH74
swissprot - A0A140LGV6
ZFIN ID - ZDB-GENE-030131-579
Ensembl - ENSDARG00000014244
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RBMXENSGALG00000006457Gallus gallus
 A6NDE4ENSG00000242875Homo sapiens
 A6NEQ0ENSG00000242389Homo sapiens
 O75526ENSG00000170748Homo sapiens
 P0C7P1ENSG00000244395Homo sapiens
 P0DJD3ENSG00000234414Homo sapiens
 Q15415ENSG00000169800Homo sapiens
 Q15415ENSG00000226941Homo sapiens
 Q8N7X1ENSG00000175718Homo sapiens
 Q96E39ENSG00000213516Homo sapiens
 RBMXENSG00000147274Homo sapiens
 Gm10256ENSMUSG00000095852Mus musculus
 Gm10352ENSMUSG00000091987Mus musculus
 Gm21693ENSMUSG00000094511Mus musculus
 Gm29289ENSMUSG00000101667Mus musculus
 Gm3376ENSMUSG00000096520Mus musculus
 Gm4064ENSMUSG00000102053Mus musculus
 Gm7324ENSMUSG00000049235Mus musculus
 O35698ENSMUSG00000093987Mus musculus
 O35698ENSMUSG00000095948Mus musculus
 O35698ENSMUSG00000094658Mus musculus
 O35698ENSMUSG00000093918Mus musculus
 Q91VM5ENSMUSG00000037070Mus musculus
 RbmxENSMUSG00000031134Mus musculus
 Rbmxl2ENSMUSG00000073894Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
cirbpb / cold inducible RNA binding protein b / CIRBP* / P60824* / Q14011* / cold inducible RNA binding protein*ENSDARG0000001335123
cirbpa / cold inducible RNA binding protein a / CIRBP* / Q14011* / cold inducible RNA binding protein*ENSDARG0000010367221
tra2a / transformer 2 alpha homolog / Q13595* / transformer 2 alpha*ENSDARG0000000786320
tra2b / transformer 2 beta homolog / P62995* / P62996* / Mus musculus transformer 2 beta (Tra2b), transcript variant 2, mRNA.*ENSDARG0000000216819


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR003954  RNA recognition motif domain, eukaryote
 IPR012604  RBM1CTR


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000381 regulation of alternative mRNA splicing, via spliceosome ISS
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II ISS
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0006509 membrane protein ectodomain proteolysis ISS
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II ISS
 biological_processGO:0048025 negative regulation of mRNA splicing, via spliceosome ISS
 biological_processGO:0048026 positive regulation of mRNA splicing, via spliceosome ISS
 biological_processGO:0051260 protein homooligomerization ISS
 biological_processGO:0071347 cellular response to interleukin-1 ISS
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005719 nuclear euchromatin ISS
 cellular_componentGO:0044530 supraspliceosomal complex ISS
 cellular_componentGO:0070062 extracellular exosome ISS
 cellular_componentGO:0071013 catalytic step 2 spliceosome ISS
 molecular_functionGO:0001047 core promoter binding ISS
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003682 chromatin binding ISS
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003729 mRNA binding ISS


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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